RNA id: XM_039806828.1


Basic Information

Item Value
RNA id XM_039806828.1
length 1671
RNA type mRNA
GC content 0.46
exon number 12
gene id si:ch211-197h24.6
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21161670 ~ 21167686 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAATTTCGTCTGTTTAAAACTGGCAAAATAACTGCTTCCTATTCTCTCCCATATCCCTCCGAATCGGCTTTGTTTTTTCTCATCATAGCGAATGTGTTCTGCCGACCTTGCGCTTTGAGGAACCCGCAGTTTGCATTAAAACATCTCGGTGGAGAAACAAGAAATGGAGGCTCATGCTTCAGCCAACCAGCTTCCACCTAAAAATGGGCCGCAGTCTAATCAAAGGAGAAATGCCAGGAGAAAGCAGCTGCAGCATTCTGCTGATATAGTATTTACCAAAGGGACATCTATCCAGACCATTCCCTCTCTTAGCAAACTCTTGAAAGGGGTAACGGAGTGTGTCATTGGTCTTCAGTATGTGTGGGAGTACCGCAGCCCCAGTAAATCTGTCCCACCACACTACCAGTGCAAACTCTGTGCTGTCTCCCGCTTGCAGCATGATATGCTTGCCCACGTGAAAGGCTGGAAACACAGCTTCAAATACCTGAAAAAGGTCCACCCTAACAAGGTCACCAATGAAGAGGAAGAGGCCATCAGAGACCCTGCTGTAAGGAAGAAAATTAAAGAAGTTTCAGCTGAGGTGGAGAAGACCGAGGGGAGGGGACAACTCAAGGTGATTCTGAAGGAGCCCTGTGAAGTACTAGCTTTCAAAGGACTCCGTTCTGCTGCTCCTAAAGTTTTGCCTACACCAGGACCAGGGATGGGACTAAAGGGACCACCCTTTGgTCTCTCAGGTCCCAAGTTCTCTGACCAGAGGTTTCTAGGGGAGTTTCCTCCTCAGAATGGTCCTCTCTCTAACTATCCAGTGGGAGACTATGGGGAGTCCGGCTTCGGAGGCTATGATTACTCGACCAGGCAAGATTTCCATGACTCTGGTATGGATCGAAGACCTTTCCCAGATGGTATGGGTAATCGCCCAGCTGGGATTGGAGATGGTTTTGGATCAGGTGGTGGAAGAGATGGCTATGGAAGGAGTGGACTACTGGATGACAACCCAGGCAGAATGTATCCTGATGAGTACCGGGACAGCCAAATGGGGAGTAGCTTAATGGACAGACCAATGGACAAGCCACTGGAGAGGCCAGGCTTGATGGGAGCAGCTCCAGAAAGTAGCAGCCTTCCTAACACACTACTTACTTACCTGGATACTTTCCGGATAGAGAGCGAGAGTGACGCACAGCTGGTGCTGAAGGTGACACAGAAACTTACAGATGTGCTGATGGAGTACAGACTGAGGAGTGTATCGACGGGTTCTAGTCTGAACAGCTTGTCAATGAGCTCCACAGGCTTCTCCTCTACAACGCCCAGATTGCTAAGCAGCAGTGACCGATACTCAAGTAGTCTGTCAGGTCCCTCCAGGTATTACAAATGACAATCGCAAGATGTGACACCTCCATCTTGTCATTCCTCTGTGTGCATCAGTCATGACTGTGCAGGAGTTGAAAACTTTGATTTTGTGTAAATGTATATGCTTttagacagttttttttttatattacttaGTAGTCTTCTTTTTATGTTTAACTTCTTTAGAATATGGGAAGATTTATAACTTTGAAGGTTTTACACAATTACTTGTGCATGTTTTCAGCAGCTTTACCTGAACATGAGTGTATGGCCATTGTTAATTTCCTAAGGCCCTGTTCTATTAAAAGTAATGGAGAAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99289 lncRNA upstream 4764 21101170 ~ 21156912 (+) True G74234
TU99287 lncRNA upstream 9164 21150389 ~ 21152512 (+) True G74233
TU99243 lncRNA upstream 267734 20893139 ~ 20893942 (+) True G74207
TU99244 lncRNA upstream 269021 20891684 ~ 20892655 (+) True G74208
TU99241 lncRNA upstream 319907 20840560 ~ 20841769 (+) True G74205
TU99348 lncRNA downstream 75543 21243229 ~ 21243567 (+) True G74274
TU99365 lncRNA downstream 121485 21289171 ~ 21289375 (+) True G74286
TU99366 lncRNA downstream 121867 21289553 ~ 21290314 (+) True G74287
TU99367 lncRNA downstream 123356 21291042 ~ 21292380 (+) True G74288
TU99494 lncRNA downstream 166983 21334669 ~ 21335693 (+) False LOC120563169
XM_039806822.1 mRNA upstream 10163 21129350 ~ 21151513 (+) True invs
XM_039806821.1 mRNA upstream 10163 21129507 ~ 21151513 (+) False invs
XM_039806823.1 mRNA upstream 10163 21129507 ~ 21151513 (+) False invs
XM_039806831.1 mRNA upstream 44583 21106838 ~ 21117093 (+) True stx17
XM_039806523.1 mRNA upstream 58075 21083513 ~ 21103601 (+) False nr4a3
XM_039807238.1 mRNA downstream 4837 21172523 ~ 21183348 (+) True tmem67
XM_039807239.1 mRNA downstream 4838 21172524 ~ 21183348 (+) False tmem67
XM_039807240.1 mRNA downstream 4838 21172524 ~ 21183348 (+) False tmem67
XM_039807088.1 mRNA downstream 16265 21183951 ~ 21190820 (+) True pdp1
XM_039805736.1 mRNA downstream 67501 21235187 ~ 21240428 (+) False rnf41l
TU99269 other upstream 150305 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 1512165 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 2002681 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 2002681 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 2415001 18744662 ~ 18746675 (+) True LOC120562824
TU99513 other downstream 235441 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 431369 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 601862 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 964892 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 969879 22137565 ~ 22139223 (+) False LOC120561537

Expression Profile