RNA id: XM_039806850.1


Basic Information

Item Value
RNA id XM_039806850.1
length 7209
RNA type mRNA
GC content 0.44
exon number 14
gene id si:ch211-113g11.6
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33206707 ~ 33260917 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGTGATGCGTTTGTAGGCAATTTTTTGCAATCCTTTTCATTCTTGCATCCGTGCTGAAAGCCTTCACTCCCCCCTCTGCCTTTTGTTTCCGAGGTGGAGCCTGATACACCGACTTCTTCAAACTGAACTGCCGGCGAAGCAGACGGACAAGATAGGACCGGCACCAGCAGTCGGTGGCACAGATCTGGGACGCAGCAGATCGAAAGGAGGGACCATAAAGGCAGTTGCAAGGAAGAAAAAGGGATCTTGTGGAACGCATTGTACGGTTGAATCATTTTACAAATCGGCCACACGGTACAGCTTCAAGAAAGATGAATTATTTCATCCTGCTGTCGCTTTTTGCCACGATTATCACCGGAAAGTCACCTCGGCTGAAATTTGTTCTGCACGAGACCTCCAGGTTCCACTTCAACAAACCTGAGAACTACATCAGCATGTACCACCAGGAAGGGAGCGACACGCTGTATGTGGGCGGCCAGGCGATGATCTATGTGTTGACGTTCACTAACAGAGGGGTCCGCAACCTGCAGATCCCAGCGGCATCTGACCAGACTGCAATTGATACCTGCAAGGCAAAGGCTGCGCCACTCGAGCTGGAGTGTGATAATTTCATCACCGTCATTCAGAAAGTAAACGACACAATGATAATATGTGGAACTAATGCTGGAAGCCCCAGGTGCTGGATGCTGGTAAATGAGACTGTGCTGACTGACGTCCAGGGCAACGGGCAGATAGCATCAGCGTCTGACATCTCACCACCCTACCCTTCCCAAAAGTCCATCAGCTTGCCTGCAGATGGGAGTCTGTATTCTGCTATGTCGTCGGTGGCAGGTCACGTCGGCTCGATCCGCCGTACGTTTGGACCCCAGAAGCTCCTGAAGACGGAGAACGTTTGGCTGCTGAATCCGCAGTTTGCCGGTGCAGCCATAATGCCGTCTACACTGAAGTACAAGGAGGAGATCTACTTCTTCTTCAGCGAGCTCAACAAGACAGCCAGAGTGGACGAGGAGCCTTACAGGGCACGCATTGGCCGAGTCTGTACGGTGGACGAAGGCGGCATCAAAGCCCTGCTGGCAGACTCATGGACCACATTCATGAAGGCCCGGGTCATGTGCGGCGCAGGAAACACTCAGCAGCAGTACAACAACATGAAGCAGGCGGTGGTTCTGACAGCGCAGGACAAGAGGGCTGGAGTCCTGTATGGCCTGTTTTCCAACGCATGGGGTAGAACAGTGATCTGTGCCTACTCCATTGAAGATATTGACCAGGCTTTCTCCACATCCAAACTGAAGGGCTACAGCAGTCCATTCATTGGCAGTCGCCCTGGGATGTGTGTCCGCAAAAACTCGACAGCAGGAGGTCACAACGACATCAAAAACCTCGGGGTGATCAGATATCATCCAGAAATTGAGGATGTGATCCGGCCTGTCGGTGTGGCTCCACTGGACCTGCCCACAGATGACCAAATCACACACGCTGTGGCAGACATCGTCCTGGCGGTCAATGATGAGCACTACAGCGTCCTGTACCTTGGaacagACCAAGGCAAAGTTCTCAAAGTTCTTCACAGTAGCGAGGGGGTCTTCATCATATCTCAGTACTCTCTGTTTCACAATGAGGGCCCCGTTCTCAACATGGCCATCGACTCCCAAAAGGGACACCTGTACGTTGGTACAGCGATGGAGGTCCAGCGGCTGCCACTAGCTGACTGCAGTCGCTATGGCGACACGTGCAGGGAGTGTATCCTTTCCCGGGATCCGTACTGCGGCTGGGACAGGGCCAGGAGGAAGTGTATCCCAATCCCGCCTGGATACAACGTCACCACAGGGACACTCATTCAGAATCTGGACCGTTCAAACTCCTCGGTTTGTGGGGAAGCTGCTGCTTTAAAGCAGCGTAGCACTTCCCCCAGAGAAGTGCTGGTGCAGTCCAACACCTCCATTTTTCTCCCTTGCCCCGTGCGCTCCTTCCACGCCTCCTACCGCTGGGTGAAAGACAACTGTGTCAAGAACTATCCCTGCCTCTTCTCCGGAGACTTCTGCGTCCTGGGGCCGGCTATTGACACGCCCCTGAAGGAAGGCGTCTTCCGCTGCATAGCCACCGAGGACGGATTTAAAGTGGAGGTAATCTCCTTCAGGCTGGTGAACGACGGCAGGCTCCTGGCCGCCTCCCTGGCCTCCACCTTGGGGCCGTCGATCCTGCTCGCCATGGCTACCCTGTGGCTCCATTAACTGCAGCTACCGCTAATGCTAACCCCTCATCCTTACTGGCTCCCAATGACAGGAAAGACAAGGAGCCTCTGTTAGGAGGTTAGGTTCGCAGAGCATTAAAGTAAATGGTTGGGTTGGACAGTGGAAATTCAGCTTTTTTAGAGAAAGAATCCCAAAAAAATGTGAACGAGGGATTAATTCTGTATTTTTTGCAACATATCTGCAGCTGTCTTAAAGAGATCAGAACTcaaaacatgctttcattaacATTAAGACTAATTACTGTCCATGAATTGACTTGCGAGTTCGATCAACCGTAATTAGGTGCTTTGCGAAACTATCCTCTCTGACTCAAAACATATCGTATGAGTTgggcaaaaaaaacaccaatacCAGGCCAATTCTTTTTACCATTTCTCTACTTATTTTCAAATTGACTTGACTGTGCTTATTTGTGAATATATAAACCTTTAATACCGCTCTTACATTGAATCATTCATGTTGTTAAACCTTATTGCTATAGCTCATTAGTACTCATCAGTACTTAGAAATGTCTGGTATTGAGATTTAAAAAGCCTTAACACTTCTGGGACAAACTCCTAAGCACAATTTTGCAGTCGAGGCAGAATACTCGGTTGGACTTGGCGCTATAATTAGTGCCGCTGAGTCTAACAACATCGCTGGGAGGAAGTGTCAGCTTTTTGACAGGAAGTAGGCGGATGGGCAAGAGCTCATTCTCGAACATCACTGTGTCTCAGCACCTCCTCCTCAGACGAGGCAGTTTCTTGCAACTTTTTATCAGATGGTATCAGACATCGTCATTACGCCTTGTTCACAGCTTTGTCCgtgtttttctctttaaatgCCATCGTCTTTCCTCTCCAGAGCATCAGAAACAAAACacttaaccctctgaggtctaagggcattttctcAATTTTGACATATCTCCTTAAATTCACCTTTTAAGGGTATTTGCATATGACTTGATGCCCATGTGtttcacatcaaaatgttcagaacaaattCAGCTTTCTGGATAGTTGAGCCTCAAGTTGTCCTAGTGCAATGTATAAAGAGATCATTTGGCCCTAAAGCTGAAAAGTTGAAGTTcccttttttttgtactttaaatGAACAATTCTTTTGTTGCTTGAATTGAGCTTACCAAAGCCGACGGAAACTTAAGTCCTCCATTAAATACCCAATAAAAGAACGCAAAAGGAAAGATTCTGCTGATTCTGGAAATATGTAAACCACATTTCTGCGCTGTATTATTGCTTAAATATTAAATGAGACATTGAATAAACATTTCCATGGACTCGCCATGCATTCATTGACCTCAGAAGGTTAAACACTAAGGAGCAAACCCCTCAGAATCTTTCAACAAAGGAGCCTCAAACATAAACCATAAAATAATTAAACCCATCTCTAACAATCAACGTGAaggtttaaagcaacactatataacttttcccgcttcggtccccctacaggttggaagcagaattgtccattacattacattgtccagttcattcgaactacggatccactacccgatctggcaaacttgcatccaacctgtagggggaccaaagcgggaaaagttacacagtgttgctttaaaatctGGGTTTCAGTTTGGTCTTTTATTGTGCAGAGACGGTGGGTAAAAGTTATGTGAAACAGCACTGACTTTTTGCTAATACCGAGTATGTTGTCGGCATGTTCTTGGTCCAAAATCCCAAGTGTCCATAAGCTTTTCGGAAACACAAAGTGACAAAGAGGAGCTAATTTTCTGCAAATGACATCCAATTTCTGTTAACCCAACAATGCGTAAAGATGTGAACAAGGTGTTGCGCTATAGCAATTTcaataaacacacacttacattaTCATAAGGGCAGATGAAGCTAAATGGAACTGCATATTAGGCTTGCATTTTATAGTTTGCTTGGAGAAAAAAAGGCTTGTACTTAGATCCGTGAAGTGTGTTCTGTATTTTATTGCTCTGCAGATGCTGATTTCTACCATTGCTGCCTATGTATGTTACACTTTTTCCTGATTGTTTGGGTAATTATACCATAGTTAGAACGTGATATATAACCATTGACGGCTTTGCCTCTCTTCCCAGGGACATCGGTGCAAATAGACAAGAAAATGGTTTGTGTTTGTCATACTTGTATCTCTATGCTGTGAAACAAAAGGCTTGACAGATTCCAGTAATACTGTATGCTTCACTGATGGTCAGCAGCAACCACAACCAGCGGCGAGAGCAGTCATCAGCAACCACAACCAGCAGTGGCGTTAACATCACGCTATATCTGCAGGATCGTCCTTTAACCTCTCTTTAAATACTACACTTTATTAAGACCAAAAAGGCAGATTAAAGCTGAATGTAAAGAGAAACAAGTGTTGTGAATTTTGCTGGAGTTCAATAGCTCTAAAATGCCAGAAGAAGTATGCTTTGTGCGGTGATGAATTATTCAGCGGATTAGCATGTTCTCCAGAGCTTTGAGAATTATCATTCAGTAGTGTTACATAGGCCGTGCTGAGGATTTCACAGTGGCAGAGATGTCATTAATAGCTAATTTGACAATGGAGCCGGCTCGTCATGCAAAGTATTAAAGAATTTATTTCACACCGTCAGGGATACGAGCATCGAGCATGTCCCCAGCTGTGAAAAATCTTGAGGTAGTGTTGTGCTTCTCATTCTGCTTGGTTGTGTGTTGCTGCTCTTCGAGCTGCTTGCTTTCTGCATTGCACTGACTCTGGATACTGACTGtgccaagaaaagaaaaaaatgaaaaaaaacaaagctatGTTGAGCCAACGCATCCCCCCCCTTGACGCGTCTTCTTATGTTCATTTGCAAATTCCCTCGCTCCTTACCTGGCATAATATTTTGTCCCAGACAAACTGTGCACATGTACAAAACTGGCCATCCGTTCAACCAaactcacaaacacaaaccaaCTGCAGGTCTAACATGCATATTTATTGTCTTTGTATTGCCACCAGTGTGGGAAATGAACACCACCCACTGGCCAAGTGCTGGTAAACATTTAGTAGAGGCTGTTGTGATGATGCCAGAGACCTCTGGCAGGAAGCGTACTCAACATTCACAGATGTGCTCAAGGCAGTTTCCTGTATAACCTTCTTTATACTGTCACTATGACTGCTGTGTATGTGTCGTTGTGATATATCTCCCAAAACTGTTATCACAAGCCACAATTTCCATTCATGTATTTTTATCTGCATTTTGAAAAGCTGTATGGAAACTGCAAAATTCGATAGAACTTTTTCAATTGCGGAATATTATATACAAAAAAAGCTATTGCTTGCTTGAGGTGGAAAAAGAGTTGAAGCTCTTAATTGGATATGGAAATGCCTTTGCCGAATACGTTCTGACCTGTTTCTGGTATCCGCGTAATGCTGCGTGCATTAGAATCATTGAATTAATTAGTCTTTGTCTCTGGACAGCATTAACAATACCAATACTAGCTGAAATGAAAGAACAATTAAAACTTGCCCAATTGAACCAAATTCCCAGAGACCTCCATTTTTCTCTCGGTGATGGGTAAGATGGCCAAGGCGACTTGTTTTATTTCCGGTTAGCAACCTCTACTTCTTCTACTCTACTAGCTTAAAGCGCCAACTTCTGACCAAACTAAGCTGCAGCAAGGTTTATTTACTCCAAACCAGTTGATAGAAACATACCTAATTTGCATGTCTTTTTTGCGACGTTTCAAAGATTTGCTTAAAATTCGGTTGAGAATTGAATGGAAACACGGCTTAGGAGAGGCCTATGCTAACCAATAATGGTAATTATGCAACAAGCTGGTATCATAAGGTTATTCACCGTGTCCCAAGTCCATACTATGTCCCTAGTACATACTATATACCTGTAGAGAACAGAAATATGACAGCATTTGTTCAAACGCTAAAAACAACCtactttatatttatattaccaAAGGTAGAAGTAGCATGATAATGGAACTCCTGCAATATAGATAAGATAAAATGGTTGTATTTGGTAGTTGGTGGATGGTGTACAAAGCGTGGGACTTTAAGATGGGAGACCATGCTTCACATCCCATCGTCTACCATcagtgtggtttttttttaaatgcactgacaCGGGtcccccctaaccctaaccctaaccacacTAAGGCTGTGATCTTTCCTCAACCTTAACCAAATAGTTttagttgcctaaacttaaccaaactTTCAGGATAGAGGTGACTCTTTTCCAAATACATTCACATGTATATGTATTCATTTGGCAGATGCATGTTGTACAAAGGAGCATGTCTATGTTATAGTTTGGATTTGGGACACATAGAATAGGTGGAATCAGGCTTTCATCGTTCTCCACAGTACGCAGTCGTCATCCTCAACTCCACAAGGCTTTGCTTCAATATCAACACTTTTCCAGCCAACGCGTGGAATTAAGATTTATAGCATTTATAGCATTTACCAATAATTGCCGTCTTCAAATCTCCGTTATGTTCAAGTCCTTGCTTTGATATGGATATTCACACAGCCGCTTTATCAAAATTCAGTTATCACTCACTCACATCCGTCATCGTCAGCGAGTCCGTGAAAGGCTAATCTCCTTCAAAGCAAGCTCTTGATTTGCCTTCAGGAAACCAATTTAATGTATCACGCTATCTGCTGTAAACGAACTGACGTTGAGTGTAGCGGGGTTGCTGTCTTGTTTGCTCtgggtttttttttagttcaagTACTGTACATGATGACGTGTGCCCACGATTCTGTGTCTTGATATATCTAATTTTCGAAGTAACATGCCAAActctattattattaaagaGATTTATATTGGTGCCATGCCGGTCTAATGCCATCTCATAAcatgtatttttaaaacaacagaTATCTATAGATATTCATGTAACAAACCCATATTGACATGTGTTTCCCTGAACATGTgcgttgaatattaataaaatacaagTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104151 lncRNA upstream 75834 33124504 ~ 33130873 (+) True G77894
TU104148 lncRNA upstream 88829 33115275 ~ 33117878 (+) False G77894
TU104163 lncRNA upstream 94642 33111426 ~ 33112065 (+) True G77903
TU104160 lncRNA upstream 100136 33106209 ~ 33106571 (+) True G77900
TU104159 lncRNA upstream 101074 33104443 ~ 33105633 (+) True G77899
TU104259 lncRNA downstream 35334 33296251 ~ 33299542 (+) True G77986
TU104258 lncRNA downstream 37087 33298004 ~ 33299542 (+) False G77986
TU104265 lncRNA downstream 63687 33324604 ~ 33325020 (+) True G77991
TU104267 lncRNA downstream 199105 33460022 ~ 33460235 (+) True G77993
TU104276 lncRNA downstream 232507 33493424 ~ 33493660 (+) True G78001
XM_039807226.1 mRNA upstream 6065 33175909 ~ 33200642 (+) True lingo4b
XM_039807225.1 mRNA upstream 6065 33196215 ~ 33200642 (+) False lingo4b
XM_039804862.1 mRNA upstream 110569 33087190 ~ 33096138 (+) True onecutl
XM_039805115.1 mRNA upstream 157570 33032239 ~ 33049137 (+) True hormad1
XM_039805114.1 mRNA upstream 157570 33033735 ~ 33049137 (+) False hormad1
XM_039804734.1 mRNA downstream 2813 33263730 ~ 33278517 (+) True tlr18
XM_039804735.1 mRNA downstream 9519 33270436 ~ 33278517 (+) False tlr18
XM_039804761.1 mRNA downstream 22130 33283047 ~ 33286346 (+) True s100a1
XM_039807190.1 mRNA downstream 212255 33473172 ~ 33489674 (+) True prdm1a
XM_039805280.1 mRNA downstream 296334 33557251 ~ 33566277 (+) True dctn3
TU104140 other upstream 105173 33100413 ~ 33101534 (+) True G77888
XR_005639638.1 other upstream 785235 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other upstream 785235 32405133 ~ 32421472 (+) False LOC120561717
TU103881 other upstream 1226798 31976318 ~ 31979909 (+) True G77682
TU103600 other upstream 2070561 31134829 ~ 31136146 (+) True G77447
unassigned_transcript_355 other downstream 365014 33625931 ~ 33626002 (+) True trnap-agg_3
unassigned_transcript_356 other downstream 370122 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_357 other downstream 370725 33631642 ~ 33631713 (+) True trnap-agg_5
TU104301 other downstream 578159 33839076 ~ 33861112 (+) False bmper
TU104327 other downstream 633455 33894372 ~ 33904263 (+) False LOC120562157

Expression Profile