RNA id: XM_039806894.1


Basic Information

Item Value
RNA id XM_039806894.1
length 1785
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC120562939
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16726348 ~ 16729348 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCTTGCAAAGCTAACTTGTGGAAAGCGAACTCTTTGAGTTTTAAACCGCTTGAGACAAACTACTGGAAAACGGATCttgttgaaaaaacaaatctaCTGAATCACTCAACTGTTGTGGGAAACCGGAGAGCTTGAACATGGCCCTCTGTCGTCTACCTGAGGAGCACCTGCTGATGGGAGTCGCCCAGTTGGACATCCGTggagGTGGTGTAAACCCCTTCATTGAGCGTCCTGCAGAACATGGCCTCCCTGAAGATGAAGGTGAGTATGAGGAAGGTGAGTATGAGATTGTTGTTGTAGATGAAGTTGAgctctttctccccctctcctcgGGCGAAGAAGATGACAATCAACTGGTGGACACCGAACAGGATGAGGATGAAGACACAGGTGATGAGAACGACTGGTCTGACAGTGTCAGCGAAGATTCCGGGTATGACTCCCTGTCTGAAGATGAAGAGGATGAAGAGGTCGTTGAAGAGGATGTTGAAGAGGATGTTGAAGAGGATGTTGAAGAGGATGTTGAAGAGGATGTTAAAGACGATGTTGAAAAGGATGTTAAAGACGATGACGATGGCAACATCCGAACTTGCTCCCCTCTCATCCAGCAGTTCCTACCTCCAAGCTTTTGGCAGGGATGGGAACAAGTGTCTATCCCTGTTCCCTCTGGCGCTTTTCTCTGGCCCCGCACTTTTGATGTTCAGCATCAGGAGATTCCTGCGCAGCAAGTGGAACGTACTGAAGACGGTCTACCCTCAGCCTCTCAAAGGTCAGAAGAGTCTGCTCCTTCAACCTCAGGCCTCGGCTCCTCCACGAAGAGGAGCAGGGAAGAGAGCGACACGGTGCAGGTAAGTATGAAGAGGCAGAAGTGGAATTGTGAGGACCGCCATGACGAGTCAGCGCCCTCGAATTCAGGCCTCGGCTCCTCCACGAAGAGGAGCAGGGAAGAGAGCGACACAGGGGAGGTAAGTATGAAGAGGCAGAAGTGGAATTGTGAGGACAGCCATGACGAGTCAGCGCCCTCGACTTCAGGCTTCGGCTCCTCCACGAAGAGGAGCAGGGAAGAGAGCAACACAGAGGAGATAAGTATGAAGAGGCAGAAGTGGAATTGTGAGGATAGCCATGACGAGTCAGCGCCCTCGACTTCAGGCCTCGGCTCCTCCAGGAGCAGGGAAGACTACTGGTACTCAGCACCCTCAACTTCAGGCCTCGGTTCCTCCAGGAGCAGGGAAGACTACTGGTACTCAGCACCCTCAACTTCAGGCCTCGGTTCCTCCAGGAGCAGGGAAGACTACTGGTACTCAGCACCCTCAACTTCAGGGCTCGGCTCCTCCAGGAGCAGGGAAGACAGCTATTGGCACTCAGCACCCTCGACTTCAGGCCTCGGCTCCTCCAGGAGAAGGGAAGACTACTGGTACTCAGCACCCTCAACTTCAGGCCTCGGCTCCTCCAGGAGAAGGGAAGACTACTGGTACTCAGCACCCTCGACTTCAGGCCTCGGCTCCTCCAGGAGCAGGGAAGACAGCTACAGGGAGTCAGCACCCTCGACTTCAGGCCTCGGCTCCTCCCAATTCAGGAAATACAGGATAAGCCCTTTTGATTACCTGAGAGGAACTGAAGACAGCGACTCTGATTAGGACAGAGTTTGGGACTGTTTGCTGCAGGATTGGAAAACCTTTGCGTCTGGCAGGGCAGATAAATCCTCAGCTAGCATTTGCGTCTGGCAATGCTAACACAGCCTATGGTAGCGTCTTGCACCAGGGCCATTTGTACATATCTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97233 lncRNA upstream 231773 16494237 ~ 16494575 (+) True G72801
TU97229 lncRNA upstream 235967 16489593 ~ 16490381 (+) True G72798
TU97228 lncRNA upstream 240429 16485713 ~ 16485919 (+) True G72797
TU97227 lncRNA upstream 243850 16482255 ~ 16482498 (+) True G72796
TU97226 lncRNA upstream 244416 16480679 ~ 16481932 (+) True G72795
TU97304 lncRNA downstream 1489 16730837 ~ 16731044 (+) True G72852
TU97321 lncRNA downstream 230440 16959788 ~ 16962840 (+) True G72859
TU97344 lncRNA downstream 262368 16991716 ~ 16991989 (+) True G72879
TU97325 lncRNA downstream 336241 17065589 ~ 17065911 (+) True G72862
TU97549 lncRNA downstream 662920 17392268 ~ 17403627 (+) True G73019
XM_039806539.1 mRNA upstream 1792 16721636 ~ 16724556 (+) True LOC120562690
XM_039806537.1 mRNA upstream 7824 16632876 ~ 16718524 (+) False LOC120562688
XM_039806538.1 mRNA upstream 7824 16632879 ~ 16718524 (+) True LOC120562688
XM_039806536.1 mRNA upstream 7824 16698379 ~ 16718524 (+) False LOC120562688
XM_039805971.1 mRNA upstream 217607 16495726 ~ 16508741 (+) True mboat1
XM_039805984.1 mRNA downstream 3284 16732632 ~ 16816257 (+) False LOC120562315
XM_039805978.1 mRNA downstream 3285 16732633 ~ 16816257 (+) True LOC120562315
XM_039805979.1 mRNA downstream 3285 16732633 ~ 16816257 (+) False LOC120562315
XM_039805981.1 mRNA downstream 3285 16732633 ~ 16812753 (+) False LOC120562315
XM_039805980.1 mRNA downstream 3285 16732633 ~ 16812753 (+) False LOC120562315
TU97163 other upstream 654147 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1170396 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 1699695 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 2095885 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 2300168 14425794 ~ 14426180 (+) True G72506
unassigned_transcript_351 other downstream 639355 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 720237 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 727295 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 916165 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 1021608 17750956 ~ 17779130 (+) False paqr7b

Expression Profile