RNA id: XM_039806901.1


Basic Information

Item Value
RNA id XM_039806901.1
length 3266
RNA type mRNA
GC content 0.53
exon number 21
gene id tbc1d31
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12465949 ~ 12476564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAACTCCTCAAAACCTCAAAACAAGCAAAATTTCCTGAAACTGTAGTTAAACTGTTAGCGTATCGTTTGATAAGCATTTAAAGGACTATTGAGCTCCGATTTTTCTAAATGGTGCTAATCTTAACGGCCTTTCTGGCCGTTACTTAAAACTAaatataacgttaacgttactgcaTGATCTTTCAAATTTCGCGCTGTTTGCTCCGCCTTTAAATGGGTTAACTTAGCCAACTAGCCCGTTAGCTAGCCATGCTACTGTAAACTGGGGCAAGTCGAGTAAGGAGgatattattttgtattgtaaatGTATGCTCTGAGTTTCTTCAGACTTCTTTAAAATGGAAGTGACGGACATCGGAAACAAATTAGAGGGGAAAGTCTGGCATCGAAAACCAACACCAGGCAAAAGTGTGTTAGTGACGGTGGTCCGCACATCTCAGCAGGCCAAGACGGTGCGTTTCCTCCATGTGGCCTTTGACACCACAGGAGACTCCTTCCTGGCTGGAGATCACCATGGCAACATCTACGTCTTTGACATCAGTAGGAACAGATTTCGTCTGGTGCAGAAGACAGGGCAGGCCTGCACTGCTCTGGCATTCAGCCTTCGCAGGACCACAGAGTTCCTTGTGGCTCTGGCTGACTACACCATCAAGTGCTTTGACAAAGACACAAAGCAGCTGGTCAGTTGGATGCGGGGTCACGAGGGAGCAGTTTCGTCCATCTCTGTCCACAGCTCGGGCCGCTACGCCATCAGCACGTCTTCAGACACGGCTCAGCTCTGGGACCTGGACACCTtccagagaaagaggaagctcAACATCCAACAGTCTGTTGGCATTCAGAGGgtgTTTTTCCTGCCTCTCAGTAACACCATCCTCAGCTGTTTCAGTGATGACTCCATCTTTGCTTGGGAGAGCGACACGCTGATCTGCAAATACCAGCTCCCTGTCCCCGACTGCGGACCCAAAATCTCCTACAAGGCCTTCGCTGTCACACGTGATGGTAAGAGCCTTGCTGCTGGTGGGCGCTCCAACCTGCTGCACCTGTGGTGTCTGGACAACAAACAGCTGATCAGGGTGATTCAGATGCCCACGCAGGTCCGAACCGTCCGACAGCTGGATTTCCTGCCCGACAGCTTTGACGGAGGAGCCAGCCAGACACTTGGTGTACTGAGCCAGGACGGCGTGATGCGtttcattaacattcacacCTGCAAGCTGCTTTTCTACATGGGTTCCCATGATGACGCCATCACCACGGCGGCGGTCAGCCCTAACGGCCGACACGTTGTGGCCATCATGGATAATGGCAGCATCAATGTCTACAGTGTTCAGAGTCTCACACAGGAAGTCAACAAGCCTCCTCCCTCCCAGGTGGCGGTGGTCACTGGCGGTGGAGCTGACGATCAGGACTTGTCTAACCTAAAGGTCAGGGTCAGGTCCGAGGTGGTTCAGAGACCAGCCAAGAGCTTGGGTAGGCGGACACAGGTGAAGGTACTCCGACCCCCCGCTGGGTCTACAGCTGAGGATAAAGAGAATGAACTACCTGCTGGTCTGAATAAGAAGAGACTGGTGGCTCTGCTTAAGGCGTTTGGAGAGTATCCTGCTAAATACAGGATGTTTGTATGGCGGTCTTTGTTGTGTCTCCCAGAGAACCATGCGGCGTACAGCAGTCTGACTGATAAAGGTCTGCATTCAGCCTACCTCGCTCTGAATGATAAATACCCCATCAAAAGTCACAAGCTACAGAGGGGACtgcagagGGTTTTGTCTGCCTTCGCTCACTGGGCAGCCATCTTTGGAGAGGTGGAGTACCTTCCCCTGGTAGCCTTCCCTTTCGTCAAGCTCTTCCAGAACAACCCGATGCTCTGCTTTGAGGTGGTGGCCACTGTCATAGTGAATTGGGGTCAGCACTGGTTCGAGTACTTCCCCAACCCTCCTCTGAACATCCTGAGCATGGCGGAGAACGTTCTGGCTCATCATGACAAGGAACTGCTGCAGCACCTGGTGGACTGTGGCATCACCTCACAGCTCTACGTGTGGCCCCTGCTGGAGACCTTGTTCTCAGAGGTTTTGACTCGCGATGAGTGGCTCCGACTCTTTGACAACATCTTCTCCAACCATCCATCGTTCCTGCTCATCACCTGCGTGGCCTACGTCACCTGCTGCCGTGAGCCTCTGCTGCTCTGCTCCCAGAAACAGGACTTTGAGTATTTTTTCCACCACCGTAACAACCTGGATTTGGGAGCCATGATAAAGGAAGCGTACCGGCTCATGGGCAGCACACCAGCTGACATCCATCCCAGGACTATGCTTTCTGACTTCACACCGCTGACCAAAGGCCAGTACCCCGTGTTCAACCACTACCCCCAATTCATAGTGGATTACCAGAGCCGGGAGAGGGAGAAGATACGACTGCAGGAGATGGAGTATCTCCGCGAGAGGCAGGAGGTGTCAGCCATGCACGCAGATTTTCTGCGTCGCCAAGCTAAAGAGGAGGCCTATTATGCACAACAGGAGCTGCTGCAGAAGGCTGAGGAACAGCGCAAAAACATCCTGGCACAAGAAGAGGAAAAACTAACGCAGCAGAGGGCAAAGTTGGCATCCATGAAGAGAGAGCTGAAGGTGAAGGAGTTACAGCTGCTGGACGAAACTAAAAGACGTTTCCTCAAACACCAACAGGACCTGAGAGCCTCACAGGTCCAAAGACTAGACCAGGAGATCAGTAGAAAGATGGATCTCCGGGAGCGAGAAACAGCTGCAGCAGTCCAGGATCTAGAAGTCCGACAGATGGAGCTGGAGGCTCAGAGGAGACGCCTCGAACAGCACCTGTTTAAGGAGCAGGAGCGAATGGGACGGGAGGTCGAGGAGGAGACCGAGGTGAGGATGAGGAGGGCAGAACGAGAGGGTGAAAGCTACACAGAGCTGCTACACCGTACAGAGACAAACATGCAGgtcctgGAGGAGTCCCTGGCGGAGGCGTGCCAGCTGGGCTTGGACTCTGACTGGCAGAGAGAGGTGGCGGAGCGCCTGCAGCAGGTCGATGCcaagcaggagaggaagagggagagactgGCAGAGCTTCACAGGCAAACCCtggcagaggaggagagactggCTGACACCGTGAGAGATGTGGCCGGAAGGAGGGTGACTGAAGAACAACAATTTACATGATTGGGATGAAGTGATGAGCTCCAGAGCCCAGTTACAGGAGCAGCAGCCGCCCTGGGAGCAGCAGCCGCCCCGGTCTACAGCAGACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639635.1 lncRNA upstream 94120 12370724 ~ 12371829 (+) True LOC120561687
TU96161 lncRNA upstream 112458 12353010 ~ 12353491 (+) True G71969
TU96153 lncRNA upstream 134987 12330068 ~ 12330962 (+) True G71961
TU96151 lncRNA upstream 190008 12273394 ~ 12275941 (+) True G71959
TU96145 lncRNA upstream 249389 12216263 ~ 12216560 (+) True G71953
TU96184 lncRNA downstream 12349 12486475 ~ 12486757 (+) True G71987
TU96186 lncRNA downstream 13511 12487637 ~ 12487865 (+) True G71989
TU96198 lncRNA downstream 28385 12502511 ~ 12633773 (+) True G71995
TU96209 lncRNA downstream 44537 12518663 ~ 12520005 (+) True G72006
TU96221 lncRNA downstream 63184 12537310 ~ 12540551 (+) True G72018
XM_039805296.1 mRNA upstream 10033 12427541 ~ 12455916 (+) False LOC120561949
XM_039805295.1 mRNA upstream 10033 12427589 ~ 12455916 (+) True LOC120561949
XM_039805297.1 mRNA upstream 10033 12441914 ~ 12455916 (+) False LOC120561949
XM_039805711.1 mRNA upstream 490003 11970877 ~ 11975946 (+) True LOC120562168
XM_039806391.1 mRNA upstream 697024 11734264 ~ 11768925 (+) True LOC120562594
XM_039805266.1 mRNA downstream 4772 12478898 ~ 12484912 (+) True LOC120561925
XM_039804996.1 mRNA downstream 70370 12544496 ~ 12546473 (+) True mrpl32
XM_039804997.1 mRNA downstream 73894 12548020 ~ 12549958 (+) True zmp:0000000930
XM_039804999.1 mRNA downstream 81816 12555942 ~ 12567664 (+) False sdha
XM_039804998.1 mRNA downstream 81816 12555942 ~ 12564798 (+) True sdha
TU96107 other upstream 756440 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 849707 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 849707 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1644449 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 1644532 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 286691 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 650808 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 994101 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1659485 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1701723 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile