RNA id: XM_039806931.1


Basic Information

Item Value
RNA id XM_039806931.1
length 7458
RNA type mRNA
GC content 0.46
exon number 29
gene id LOC120562959
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19245358 ~ 19269769 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAGAAAGCAAAGGAGAAGGCAAAGGTGGAGAAGGCAAAGAAGGAGGAAGTGAAGAAGGAGAAGCCTGTAAAAGAAACAAAGACCGAGAAGAAGGCAGAAGAGGCTAAAGGCTCCAAACGTCAGAAAACCATGCAATGCAAAGTCACCTTACTGGACGACGCTCAGTTTGAGTGTGAGCTTGATAAACATGCTAAAGTCCAAGAACTTCTAACAAAGGTGTGCGACCATGTCAACCTGCTGGAGAGAGATTACTTTGGCCTCTGTACCTGGGAAACCCCAAACAGCAAGACATGGTTGGAATCCACCAAAGAGATCAGGAAACAGGTTTCAGGTGCTGTGTATGAGTTTACATTCGGTGTAAAGTTCTATCCTCCTGATCCAGCACAGCTAACTGAAGACCTCACCAGGTACTTCCTGTGTCTCCAGCTGAGGAAGGACATTATGTGTGGTGTTCTTCCCTGTTCCTTTGTCACACTGTCCCTGCTGGGCTCCTACACAGCCCAGTCAGAGCTCGGAGAGTATGACCCAGAGCTCCATGGACCAGATTATGTTAAGGAGCTGAGCCTGGCCCCAGGACAGAGCAAAGAGCTGGAGGACAAGGTGACGGAGCTGCACCGCACATACAGGTCTATGAGTCCAGCCCAGGCAGACATATTGTTTCTGGAAAATGCCAAGAAACTAGCCATGTATGGAGTTGACCTGCACCAGGCTAAGGATCTTGATGGTGTCGACATTACGCTGGGGGTTTGCTCTAGTGGTCTGATGGTTTACAAGGACAAGCTGAGGATCAACCGTTTCCCTTGGCCGAAAGTGCTCAAGATCTCTTACAAACGCAGCAGCTTCTTTATCAAAATCAGGCCATCAGAGCAAGAGCAGTATGAAAGCACAATTGGCTTTAAACTGCCCAACTACAAAGCCTCCAAGAAGCTGTGGAAAGTTTGCGTTGAACACCATACCTTCTTCAGAGTTCCAACAGTAGAGCCCCCCTCATCACGTCGCTTCCTCGTCTTGGGCTCTAAGTTCCGGTACAGCGGGCGTACTCAGGCCCAGACCCGCCAGGCCAGCTCCATGATTGACCGCCCAGCCCCTCGCTTCACACGCTCTGCGAGCAAGAGGCTGTCCCGTAATCTAGATGGagCTGGAGATGAAACTCTCCAGTTCCTGCAGCAACTCTCAGCATCAACCAGTTCTGAGGTTGATGATTGGTTCCTGACATCTGACAAACCGCAGCCTTCTCCTGAATTCCCAGCCAGAGGGGAGTCTGAGCAGACTTTCATTCGGCCCTGGGAGGAAGGGCCGTCTGTTCACACAGTCACAGTAAAATGGCAGGACACTGAGACTGAGCAGACTGGCTCTCAAAGCACCACCCAGACAGTCAGTCAGCCGTGGCAGGAGCTGGCATCGGATGAGCAATGGCAGAGGAGAAAGTCGGACGAGTGGTCTGCCCTGCTCACTCGTCTTCCTCTTTTTCCCTTTGTCCCACCTTTTGATTCTGTGAAAGAGCCAGCTAAGCTCAGCTTGGCAAAAATTAGCTCTATGGACCGGCTGTTGCAACCAACACTGACACAGCAAGATGATTGGTTCCTTTACTTTGACCGAATCTTCAGCCTATCCTCACTTCAGCGTGTTGACAAACCATTCCTCCCAGTCTCTCCCCAAGCTCAGTTCCAGGTCCAGGAGGAGGATGAGCAGGGCATGTGTGTGGCAGAGCAGGAAGTGACCAGTGAGGAGGACATTGACAGGCAGCAGGAAACTGTGATGTTGGTCCACAAGCTGAGAGTGGTGGATGTTTTGGAAAGGAGGCTGAGGGAAGTTAGGGATTTAGAGGAAAGGCTCCAGGAAATGGATGAGACAGCAGAGCTACTTCAGGAAGTAATAGAAGAGGAATTGGGTAAGGAAGAGGTAGATAGGTTGAGACAGGAAAAGGAGGTAGATAGGTTGAGACAGGAAAAGGATGATATGGAGCAGGAAGAAAGAATGCAATTTGAAGGTGTAACAGAAACAGTCTTGAGAACGTCTGTGAGGACAATAGACGTAAAAGAGGATGAAATGGATGAATTGGAAGAGCAGATAAAACGGGTGTTTTTAAAAGGCTTGGTACCTGAAGAGGAAGACTCCGAGGTGAAGCAACAGAGTGAAAAGGAGGCGACAGATGAGAGTCTGTCAGATGATGGCTTGAGAGAGAAGCTACGCCAGATAGAAAGGGAATGGAAAGATGAGGTGGAGGAGAAGTTGAAGTCTGGATCTTCAGATGTCTCCAGTACCACTTCTGTAGTAGCATACCAGAAGGTGGAGCGTAGGACTAAGAAGAGAGTGACTATTGTAGAAGAGAGAGGGCAGAAGCAGAATGGAATAGAAAAGGTGCAGGTACAGTATGATGAAATGTCAGAGGAGAGTCTAGATAAAGATGGGACATTGTGTAAGACAGAAATACGGGAAGAGATAACTGAGAGAGAAGTCACAGAGAGGCTTCAGGCTGAGGATCAATCTCAGGTGGCAGATAAGGACGTCTGGTTCATACTTTTTGACCGCCCTCCACGCAGAGCTGTTTTTAAACCACCAGTTACCACCGTGGAACGTACTCAGGTGGATGAAGGCGTGTATTTCACCTCAGAGACTGAGATTACAACAGTTGAGGAGAAAACAGAGATTATAGTAGAAGCGAGACAAACAAGAGAAGAGGAAGTATGGCGTGTACCAGAGATCCCACCACCACAGACCATcacagagagagatgatgacTGGTTTGTGTTGCTGGATGCTGTTCCCAGGGAAACATCTTATGTACCACCAGTTACCTTGAAGGAAAGAGACCAAATGGGTGCAGAAAGGTTTATCTCGGTCTCGGAGGAGGAGATTATACAAGTAGTGTCTGAAGAGAGAAAGATAATAGAAGAGGCGCCAAGACATCTACAAGAAATCCCACAACAGCCAGTGACCAACAGAGATGATGACTGGTTTGTGTTGCTGGATGTTGTTCCCAGAAAAAGGCCATATGTACCCCCAGTTACCTTGATGGGAAGAGCCCAGATGGGTCCAGACAGTTTTGTCTCTGTGGCTCTAACTGCAGCCGAGGAGGAGATTAGAGAAGTAGTAGCTATAGAAGAGTCACCAAGACATCTACAAGAAATCCCACAACAGCCATTGACCGACAGAGCTGATGACTGGTTTGTTTTGCTGGATGTTGTTCCCAGAGAAACATCCTATGTACCACCAGTTGCTGTTGCAGAGCGTGTTAAAGTGTCCCCAGAAGAACATGTCTTTCTGGTTGAAATAACAACCATTgagcagagagaaaaaagagtggagattttggcaGAAGACAGAGAAATAAAAGTGCTGAGTGAAAAGCAAGTAATAGCACTGCCACAGGCTGTTAGAGAGATAGAAGATGATTGGTTTGTGCTGCTGGATGTTCCCACCAGAGAACCATCATATGTGCCACCAGTTACCATGGTCGAGTATGTTCAGGTTTATCCTGAAGAAAGCGTTCCTACTGTGGCCGAAACAATAACCGTAGAGTCGAGGAAGGAGGCTGTAGTTGAAGAGATTGTGGTGcaaaaagaggacagaggacagcagAAAGTATCCCAGCCAGTCAGAGAAAGAGATGATGACTGGTTTCTTCTGCTGGATGTTGTTCCCAGAGAAACGTCCTATGTACCTCCAGTTTCTCTGGCGGTACCGAGCCAGATTCATCCAGGTGTTCAACCTCAACGAATTGAAGTGATAAGCATAGAGCAAaagctgcagcatgttgatcCTAAACCAATTAGACTGCAGCCTTCCGAGCCACTGTCAGAGAGAGATGATGACTGGTTTGTGCTGTTTGATACTATTTGTGAAGAGGCAGTCCTACTTCCATCAGTTACTCCTGTTGAGATTATTCCGGATATGAGCAAGATGTTTAAGGTTGAGGTGACTACCACAGAGACTAGAACATGGAAGAAGATGATAATTGGTGTGGACAGCCGGCAAGATGTGACACATCTGTCTGAAATAAGAACCGGCAAAATTGCACTGCcgtcagagagagaaggaggagatgaTTGGTTTGCTCTGTTTGACGACATCCGCGAAAAGCCTGTTTTCATACCGCCAGTTGCTGTGGTTGAACGTATTGTGGATGTGGTGGCAGTCACTGAACCGAAACCCAAATTCATCATGGAAGACGTGAGGCCCCCGGTGAAGTTGGTGGAGATGAAACCGTCACATCCGAGACAGGTGGATGACGACTGGTTTGTGCAGCTAAATGTTGCAGCAAAAGTACCAGCGGCTGTGGAGGAACGTATCCGTACGCATCCTGAAGTAAGACCAGCTGAAGGGTTTGCAGCCATAGAGCAGAGAGCACGGCAGAGAATTACTATAGTGGAGGATATGTGGCAGCAGGAGAAGGCGGTACAGCAGAAACCGCGTCCAGCAGTGAGAGAGGTGGAAGATAATTGGTTTATTCTTCTGGATGTGGCCACTAAGAAATCAGTCGCTGTCCCTGAGGGCATCCGCTTCCCAGCAGAGGTGAAAGTTCCTGCTGTGGCCAAAACAAGGATTTCCGAGAAGAGACCACAGTTTGAGAAACGGATCCTGGAGGAAAGACGTCCACTCGCACAAACCCATGTCAACGATGATTGGTTTGTTCTGCTAGATGTTGGCCTCAAAGAGTCAGTGGTGATTACACATAGGGGCACCCGTCCTGTCAGCGCTCCAGTCTTCTCCCAGGCTGCTCTGGCTGAGGCAGGGATCCCCATGGCCCTCCTCGATCAGCCCCAGACCTCCACTCCAATCAGGACCAGCCGGCTGGAGGAAAGAAAGCTGGAGGTCACTGTAGAAGCTGTGGAGCCTTCAAAAATCGAGACTGTGGCTGAGGTTAAGGAGTTTGATAAGCCTCAGGAGGACCTGCTCCGGCACCATGCCAGCATCAGTGAGCTGAAGAGGAACTTCATGGAAGCCGCCCCGGAGACCAGGCCCAGTGAGTGGGACAAGCGCCTGTCCACGCACTCTCCGTTCCGTACCCTGGGTATCAATGGTCAGCCTCTGCCCAGTGCAGATGGGaGCATTAGCTTCCTTTGCAATGGTTCAGAGACAAAGACTGCACATGAGGAAACCAGCAGCAATTTGGGCTTTTCAGGCATACCAAGGCCCACTGTAAGCCACAAGAGTGTGTCTGATGGCGTTGACGCCCACGGTGCTCCAGTTGAGGAGGAGTCATGTGATCAGGAAGTGGTTGTAGTTTTTGAGACCTCCTTGGTGCCCATCCTAGAGGTGGAGATGGCGCAGCTGCCTCCCTCCCTTGACCCATGCTGTAAAGCTTTAGATGGGACGCAGGAGGAAGAAGGATCGTGTACCGAAGTGTCGGAGTGCTCTGGAAAGATAGCTGGATCTTCCCCGGCTTCCTATTTCAGGGGCGATGGTCCACAGGTCGTACGCTGCTTCCAGCCCCCTCTGGTGCAGACCCAGACAGTCACCATCACAGCTGTCTCCAACTCCTTACCCAGTGGCATCTCCACCACAGAGGTCCCTATCGTCCCGACCAAGAGCATCATCTATGAGTCTTCAAAGgTGGCAGCAGATGGGACAGAAGAGGACAAGGATGACACAACTGTGTCCAGCTCCAAGACTGTTACCTCTGAGACTACCAGTGGCACCACAGTCACCACCACTACCACTCACATCTCAAAGGTAGTAAAAGGCGGATCTTCGGAGACTCGCATGGAGAAGAGAATCGTCATCACTGCAGACTCTGACATCGACCAAGCTAAGGAGAAAGACGGCGGAGCATCAGCATTGTAACTGAATCACCACCTGCATTTATTCCTTTAACTTTCCACCTCTGACACACACTGACCAGCTCTATCTGCGCACACATATCCAAAAGGAAATATTTCATAAATCTGCCCCATTACGGATAACTAAGTAGATAAATCTTAGCAGATCCTCgttgttttctttctcagttgtagGTAGGGCTGCACAGTGCTCGAGGTTGATCAAATGCTCATCTCATTCAGGTGGTAATAAAAGCTTAGTGGACACACTTttagtggtaaaaaaaaaaaaatacattttcagttgAGTGGTGTCAGTTATGTTTGcttttaaatgcttttattttcctaGTGGTTTTTACATTGTTGACTTTATACAAATGCACTGTTTCCATTCCAGCTTAGACACCATTATCAGCATTTATTCCCTCGGTGCTGCTTAAGGGAACGCTAAGTCTACATTCAAGGgaatactttttttgttgtttacttGTCTATTTAATTCAGGagagacaatttttttttttatgaaatgacATACCTCACATCAATATGTGAACAAAGATATGCTGTGCACAAATTGTTTGGCTTTGTTCACTGCTCaggtacaaaaacaaaacaacttaaaaatcCCTTCTTCCCTAATCAGCCAAGAACCAGTagcctacacattattgtaaaGTTTGAATTAAAAATGGATCTATTTTGAAATATTCCTCTATTTTATAGACTTAAGGCTTTTATAGTAtttgtacaaatttgaggttTTTAAGTTATTCATCCATCTGCTCTTTAAATTGTAGGTTACCATTGTTCTGTTTACTGAATTTCGAGGTCTCTACTTAAGATTTGCTTACCCGTCTTGCCTGACACCCTGAATCATTCTTATTCGTTTCGTCTTGTAGTCCAACAAGTTTATCAAACCTTTCACAATTTCCATATGACAATGGAGTGcttccctcagccctatgttttTGTTCAGTAGCGTAGATGTCATTATTGCTTTGAAAATTCTTGGTTGATAAGAAAAGATTTACAAGCTTTGGTCTGTGTATCTCAGGTTTGATATTCTTTGTAAGACTACTACAGACCTCCCTATGATTGTATGAGGAATGTCCGAATATGTATATCCATCCCTCCTTTAAAGGGTGAGGTCAATAAAAACAAAGCTTGTATGTCACAGTAACCACACATGTAAGAGCTGAAGGCAGCTGTCCCAGTATATGTGGCTTTTTCTCTCATAGGAGCAcaagttgtcttttttttttacatgttctaCTATACAGTAATTTATTTGTATTGTAAATCTTGTGTGATTTGATGTATTATGTTTAAACACAAGCTGGTTTCCAGGCTTCCACTAGAGATGTCACAATGTTAAATATTGCATTAATTATCAACCAAGTTTGTAAAGCCTTTTCACCACATAGAAGTAGATTGCTCTCTCACTTGCTGTGTCCTGTGCTTTTCCATAGAAGAGGAAATGTTTAAAATACATGAATCCCTTTTAGATGGAATGTTTGTTAGAAAAGCCATTGGTATTGTAGCTACATGGACAACAGATACCTCTCCTGGAAGAAAAATGTAGAATTTCACATGAAGAAAATAGTTTTTAGACGATGGAAAATATTGTTGCTTTGTGACTTATCCCTgtcttttaattaaaaaaaaataaaagaaggcattattttgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98350 lncRNA upstream 55385 19190020 ~ 19191619 (+) False hcst
XR_005639802.1 lncRNA upstream 84200 19159464 ~ 19162804 (+) True LOC120562631
XR_005639801.1 lncRNA upstream 84200 19160821 ~ 19162804 (+) False LOC120562631
TU98344 lncRNA upstream 84216 19159781 ~ 19162788 (+) False LOC120562631
XR_005639798.1 lncRNA upstream 87986 19158475 ~ 19159018 (+) True LOC120562629
TU98390 lncRNA downstream 2958 19272727 ~ 19276516 (+) True G73586
TU98410 lncRNA downstream 49669 19319438 ~ 19320048 (+) True G73606
TU98557 lncRNA downstream 182014 19451783 ~ 19452180 (+) False si:ch211-254p10.2
XR_005639814.1 lncRNA downstream 184000 19453769 ~ 19456616 (+) True LOC120562732
XR_005639810.1 lncRNA downstream 344734 19614503 ~ 19625611 (+) True LOC120562701
XM_039806503.1 mRNA upstream 26052 19211495 ~ 19220952 (+) True LOC120562666
XM_039806502.1 mRNA upstream 35606 19205598 ~ 19211398 (+) True LOC120562665
XM_039806917.1 mRNA upstream 42305 19198520 ~ 19204699 (+) True LOC120562955
XM_039806478.1 mRNA upstream 52198 19193475 ~ 19194806 (+) True LOC120562651
XM_039804866.1 mRNA upstream 54902 19190101 ~ 19192102 (+) False hcst
XM_039807291.1 mRNA downstream 8546 19278315 ~ 19280622 (+) True LOC120563155
XM_039805004.1 mRNA downstream 59181 19328950 ~ 19339714 (+) True rxrbb
XM_039805006.1 mRNA downstream 59181 19328950 ~ 19339714 (+) False rxrbb
XM_039805005.1 mRNA downstream 59455 19329224 ~ 19339714 (+) False rxrbb
XM_039804704.1 mRNA downstream 164921 19434690 ~ 19440233 (+) True slc6a19b
TU98340 other upstream 88009 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 88009 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 500329 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 593367 18652411 ~ 18653637 (+) False LOC120562819
TU98016 other upstream 609697 18635436 ~ 18637307 (+) False LOC120562796
TU98645 other downstream 377206 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 1738264 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2133358 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 2329286 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 2499779 21769548 ~ 21770286 (+) True G74633

Expression Profile