RNA id: XM_039806957.1


Basic Information

Item Value
RNA id XM_039806957.1
length 3528
RNA type mRNA
GC content 0.47
exon number 22
gene id osbpl3b
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19947456 ~ 19976994 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTTCTCAGAGCGTGGCTGGACGGTGCGTGTCTGTACATGTCAGACTGGAGACGGCAGGCTGTCTGTTTGACGCTGGCATTTGAGTATCTCTTCATTGGCTGCGTTCTCTCATTTGGATTCAGATAAACCGACTGTTTCCAACATCTCTGTCAGTCCTCATCACCTGGAATTCACATCTGTTACTCTGTCAAGTAAAGGGAATGTTCCTGGTACTCCAGCCTTAGCGTGCACTGGCCAGTCTGCAGCAAGATGGGCTCAGAGGAGCACAGTTCAGCCATGTCGCAGAAGATGTCACGCAGCAACAGCAGCTCCTCGTCCAAACTCGACAGCCGCCAGGACAGCTGGGAAATAGTGGAGGGTCTGCGTGGAGGCTTCAGCAATGTCCTGGAGCCCCAGAAACAGGAGGGCTACATGTTAAAGAGGAGGAAGTGGCCCATGAAGGGCTGGCATAAGAGATATTTCTTCCTGGACAAGGGCATCCTGAAGTATGGCAAGTGCAGTGCAGATATTGAGAAAGGGAAACTGCATGGCTGCATTGATGTGGGTCTCTCAGTCATGGCCATTAAGAAGAAAGCCAAGTGCATCGATCTTGATGCTGAGGAAAACATCTATCACCTGAAGATTAAGTCACAGGAGCTGTTTGATGAATGGGTTTCCAAGCTGCGTCACCATCGGCTCTATCGGCAAAATGAGATTGCCATGTACCCTACTGAGAAGTCCTTCTACTATCCCCACTACCCCTCCCCCAACTCTCCGAGCATGGCGGAGACTGCCTCTATCAGAAAGTGCATGTCTATACGAAGGCAGTCCACGGTGCATTCTGCAGGAGCCTTCCCTTTAAGCTGCAACAGCCAGGCCAAAGTAGCTGCCTGGCTCCAGTCGTCTGACGACATGGACAAGTGCTCCAAAGACTTGTCAGTCTGTGAGGGCTACCTGCTCGACCTCAACCACCTGCTTCAGAGTATGGAAGTCCTGCACCGTACCTATTCTGCTCCATCTATCCAAGCACTGCAGGCAGCTACATTTGACAGCcccaagaaagaaaagagactacCAAAGAAATGGCGCTGTAAAAACTACAACAAAGATGTCAAAACAACTCTGCAGGTACCCAGCTGCATCTCCTCTGGCTCTATCCGGCTGCACGCTTCTAACCCTAACCTCTCCACCGCTGCACTCGCCAATGATAAGGCTGACACTGAATCCCTGGATTCCACTTTTGACGTGGCCAAGCTTCAAGAGGACTTCTGCCGCGTTGCCACCAACTtgCATGCAACCATGAAGACAGCCCTGAGTTCACTAacatctgagagagagagattaaaacAATGCTTGGACCACGAAACAATTCCCCCTACATCACCGCAGATTGTCGGTTTGAAGAACACGCTGGCAACAAAACAGGACTCTGTTGATGAATCCCGTCCCCTCATACACCAAGTGTCCAATGAGAGCAGAGCTTCAATCACAGAGTCTTTGTCCGAGTTCTTCGATGCACAGGAAGTTCTGCTGTCCGCTAGTTCCTCTGAAAATGAGGTATCAGAGGATGACTCTTATATTAGTGACATTAGTGACAACATTTCCATGGACAACTTCAGCAACGAGACAGAAACTGAGAGACCAAACTCAGGCTCTGTCCTTTGTCAGCGCAGATCATGCCTGCCCTCGCCCAGCCCCAACAACAGCACCATCAGCTTGTGGAACATTCTCAGAAACAACATAGGCAAAGACCTTTCCAAAGTGGCGATGCCTGTGCAACTTAATGAGCCGCTCAACACCCTGCAGAGACTGTGTGAGGAGCTGGAGTACAGTGAGCTGCTCGACAAGGCTGCTAACACACAGGACCCTTTTGAACGTATGGTATACGTAGCTACGTTTGTTGTATCAGGCTATGCATCCAGCTACTACAGAACTGGGGGAAAGCCTTTCAACCCAGTCCTGGGGGAGACATACGAATGTGACCGGCCAGATAAAGGCTTGCGATTTGTTGCAGAGCAGGTCAGTCATCACCCACCGATCTCAGCTTGCCACGCAGAGTCTAAAAACTTCATCTTCTGGCAAGATGTGAGGTGTAAGAACAAGTTCTGGGGGAAGTCAATGGAGATTGTTCCTGTTGGTACCACTCATGTAACTCTGCCGGGATTTGGAGACCACTATGAGTGGAACAAGGTGACGTCCTGCATCCACAACATTCTCAGTGGACAACGCTGGATTGAGCACTATGGGGAGATCTCCATCAGAAACTCCAGCAGTGATATTTGTCAGTGCAAGATCACTTTTGTTAAGGCCAAATACTGGAATTCAAGTGTGAATGAGGTGGAGGGAGCTATCACAGATAATAAAGGGAAGGTCATTCACAAACTCTTTGGAAAGTGGCAGGAAGCAGTTTTCTGTGGAGACCCACCCTCAGCCACGTGCATCTGGAGAGCAAATGCAATGCCAGTAGACCTTGAGCAGTACTATGGTTTCACCAAGTTTGCTATTGAACTGAATGAGCTGGACCCATCCCTGAAACTGCTGCTACCACCCACAGACACTAGACTACGTGTGGACCAAAGACTGCTGGAGGAGGGGAACTTGGAGgctgcagaggagcagaagcagAGGATTGAacagctgcagagagagagacggagagtcCTGGAAGACAACAACGCAACACATCAACCTAAATTCTTCAGGAGGTCAAAGGATGATACCTGGGTGAGCAACAACACATACTGGGAGCTGAGGAAGGACCCTGGCTTCACCCAAATAGATTTCCCTACGCTGTGGTGACCCCTGAACTGCAGAACTCACACATTTCGACCTGCACAGGCTCTACTGTGATCCAGGCTGGGTTCTGGTGATATCCCAGCCTTACCATCCACATTCAGTGCAGTTCATCAAAGTTAATGCCTTAATAGCAAATGCTTATGTAAGTTGTGAAAAAATGTTTATGCAAACATATTATATGAATGTTGATACATTTAGGCAAATTTTGCCCATGTTTTCACCTGGATATGTTACACTGTATCACCAAAactgagaaaatgaaaactacTTGGTATAAAGGATGACAAATCCTTTTCATAACTTGTCTACACTAGCTTAAAATGTATTGAACAAACGGGTCACTTTAGCTGTCGTCTTATCATGGACATTCTCTACCTCTGAGATCATCTAGCCTTGATATGCCATTGATGAAGTGTACATATCCGTTATTTATTCTGCACCTGCCTGATGCCTTACTCGTACTCatattgtttaatttatttttgttgcatctctgagatcttttattttaaatgtatgttttgtaaGGACCAAACTAGAAACGATCTTTAAATCCTTACTcagcttttctttctgtctcataAAAGTAATTACTGCTTTTTGCTATGACTGTGTGAATGATTGTGCAACTATGAGCAGCAGTAGCAACCATTTTTCACTCTATCAATTGCACCATGGAACCTGGGCTTTAGGACCAAAAGTGTCCAAAACTATGCTCCATGAGCTCAAATAAAATTCTCATGCTTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98714 lncRNA upstream 126865 19820235 ~ 19820591 (+) True G73836
TU98646 lncRNA upstream 298549 19646975 ~ 19648907 (+) False G73779
TU98640 lncRNA upstream 307997 19634873 ~ 19639459 (+) True G73776
TU98641 lncRNA upstream 310574 19634873 ~ 19636882 (+) False G73776
XR_005639810.1 lncRNA upstream 321845 19614503 ~ 19625611 (+) True LOC120562701
TU98764 lncRNA downstream 42115 20019109 ~ 20052006 (+) True G73871
TU98775 lncRNA downstream 63877 20040871 ~ 20046380 (+) True G73881
TU98936 lncRNA downstream 230853 20207847 ~ 20209327 (+) False LOC120561838
TU98940 lncRNA downstream 239213 20216207 ~ 20217339 (+) False si:ch211-257p13.3
TU99044 lncRNA downstream 337490 20314484 ~ 20318117 (+) True G74067
XM_039805300.1 mRNA upstream 2281 19942987 ~ 19945175 (+) True LOC120561951
XM_039807244.1 mRNA upstream 55477 19881877 ~ 19891979 (+) True skap2
XM_039806514.1 mRNA upstream 68788 19876877 ~ 19878668 (+) True hoxa2b
XM_039806535.1 mRNA upstream 76718 19869180 ~ 19870738 (+) True hoxa9b
XM_039806522.1 mRNA upstream 79855 19865155 ~ 19867601 (+) True hoxa10b
XM_039806251.1 mRNA downstream 1763 19978757 ~ 19988747 (+) True gsdmeb
XM_039806419.1 mRNA downstream 111871 20088865 ~ 20093308 (+) True si:ch211-269k10.4
XM_039806951.1 mRNA downstream 193622 20170616 ~ 20178125 (+) True brd9
XM_039806952.1 mRNA downstream 193622 20170616 ~ 20178125 (+) False brd9
XM_039806953.1 mRNA downstream 193738 20170732 ~ 20178125 (+) False brd9
TU98645 other upstream 297945 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 788461 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 788461 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 1200781 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 1293819 18652411 ~ 18653637 (+) False LOC120562819
TU99269 other downstream 1031039 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 1426133 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 1622061 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 1792554 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 2155584 22132578 ~ 22136234 (+) True LOC120561539

Expression Profile