RNA id: XM_039806960.1


Basic Information

Item Value
RNA id XM_039806960.1
length 3789
RNA type mRNA
GC content 0.48
exon number 3
gene id irx2a
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 15408178 ~ 15414047 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACTGGCTCCTTCCCCCCTAACTCCTCACTTCATAGTGCTGCGTACTAAAAACATCGGACGCTAGGGGATCAAGACGCATGCCACATTGCCTCTATGTGGGCACTTTAACAGATCTTTCGGggttttttttcccagtaaGGGGGCTGTGGAGGGAgtgggactttttttttattctcattgTCTGATGACTGTTTGCACGGCTGATTATTGAGTTGattgtttattattttggtTGTTGCTCGCCGCCCTGCGCGTTTTTTCCTCCCTTTTTGGAATCGGCGACCTATCCCGCGCTCACCAATGTCCTATCCTCAGGGTTACCTCTACCAGCCCCCGGGCTCTCTGGCTCTTTATTCGTGTCCGGCTTACGGGGCCTCGGCTCTGGCTGCCCCGCGGAATGAAGACTTGGCGAGGTCGTCCTCTGGCTCAGCCTTCAGTCCTTACCCTGGATCGGCTGCTTTCACCGCCTCTGCCAGTGCAGGCTTCTCCAGTCCACTGTCATACTCCACGGATCCAACTACTGGATTCCCATCCTACATGAGCTCTCCATATGACGCACACACGTCGGGCATGGCCGGGGCATTAAGTTACCACCCATATGGGAGTCCAGGGTACCCATACCAACTCAACGACCCGGCTTACCGCAAAAACGCCACCAGGGACGCCACGGCCACCCTGAAGGCCTGGCTGCAGGAACACAGGAAGAACCCGTACCCGACCAAAGGGGAGAAGATCATGCTGGCCATTATCACCAAGATGACGCTGACGCAGGTCTCCACATGGTTCGCCAACGCCAGGAGGAGGCTCAAGAAGGAGAACAAGATGACCTGGGCGCCCAGGAACAAGAGCGAGGACGAGGACGAGGAGGACGGGGacggagagaggaaagaagtgGAGCGCTCTGAAAAAGCCCTGGATAACAGCGAGGCTTCAGCAGAGGATGAAGGTATCAGCCTGCACGTGGACACTCTGACGGACCACTCGTGCTCGGCAGAGTCCGACGGGGAGAAGGTCAGCTGTCGGGGCGAGCTGGGCTCTGACCCGGCCGGCAACAAATGCGACGAGGACGGCgaggaccagaaccaggacCCGCGGGCTCAGCTCTCGCCCATATCCGTCACATCGTCGCCTCTAACGGGAGTAGAAGCACCACTTCTCagtcaccaccaccaccaccaccacctccatcATCTCCACCAGCTCCACAGCCAGCGCGAGGATTTGGCCCGGAGCCTCATCAACAGCAACACTATTCACACCAATAAGTCGTCTGCATGCCTCGATAGCAGACCTTCTGCGCCTCAGAACCCTACCACAGTCAAGCCCAAATTGTGGTCGCTGGCGGAAATTGCTACCTCGGACCAAAAGCAGCAACATCAGCAACTGGGGCAGCCTGGGCAACCGAACTGCCCCTCCTCCAGCGGTGGCCTCCTTACCCCCCCTACGTCTTCCACCACCTCCCCGGCTGCCAGTTCCCCCTCCCTCTACCCGGCCCCCTCCATCCTTGGAAGACCTATTTATTACACGTCTCCCTTTTATAGCAATTACACAAACTATGGCAACTTCAGCCCCCTGCAGGGCCAAGGGATCCTGCGGTATACTAATTCATCCGGAGTGAGTCTGGttgccgccgccgccgccgccgctgctgccgccgccgccgctgctGCAAACGAGGGTCTGAGCTCCGAGGCGAGCACAAACCCCAAACACAGGCCAGACTCCCCCCTCGTTAAAAATAACCCCAACCACATTGTAGTTgtcgagcagcagcagcagcagcaacatttCAGGTCCGCAAATTTAGAAGCAAAGAAAGGTACGTAATAAACGCGACGCGGTCCGCTGTTGAACGAAACGATAaccattttgaaaaaacaacaacatgtagCCTATTTAATCTGGTGTTGAATCTTGAGattgtatttttcttaaaaCGGGGGGAGGTAAGGCAAGCCGCTTCACGGTGGAGGTAGAGCCTGGAGCGAGTTCACTTGTTTGCAATCCAAATCAACTGGTTTATTTCTTTGCGTCACTCTCATGTGTCATAGCAGTCAACCCATGGCTGTTTCTAGAAAATtaagactttctttttttttcaagcgAGCTTGCATGAGACACAAGTGGCATTATCTGACACAATTTAGCAGATtatcagattattttttttttttttaagatgagtACAATTTTAGGGCTGTATATGAGACTAGGTGACTTATTAAGATGGATATTTACAGCGCCGTCGAAGCAAATTAACGTGTGCTATGGCCTACAGTTCCATTTTAGCGCAGTGCATTTTCTGGAATAATCAATTTATAACTGTTATGTGTATTTTGGTCTGTCATTGAATCATTAGGTATCGCATTAGAATGCAGGAGGGGTGTGATAAGAAAAGCATACTGCAAATAAAAGTGCAAGAGTATACACCTAGCTACATATAGAGACATAAAAATAAGCCCATAATGGACAGGCCCCAAATCAGCCTAaccacgcgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacagtggcagcCTGGGAATCCAATAAACGGAGAATTGTTGCCATAGCTTTGAGCAGGAatccttttttttcatgtttcctctgatgtgtgtgtgtgtgtgtgtgcgcgcgcacagtGGGCCCCAGACCTTATCTTTCAGCTAAGGATCATTATAATTTCACAGGGTCAGCCAAAAGCAACCACATCAGTTATTTTGCTCTGTGCATTCACACCGCAACTTTACACCTTCAAATGTCACTTGGGTTAGGTTACTTTCCTTGCGCATATTCAAAGCTTTGCCTACATGCCGCAGGATCTTCTACAgccgttttattttatttatttgttttataacGGCAATTAGGCAGTGGAGGTTTTAATAAGCACTTGCAGTATAGAGCTGTTTGGGTAAAGCGAGCCTGAGAGAACTCGTGGAGGGAGTCGATCATTTGATCGTGTGGGATTTTTATTTCCATGGTCTGCAGGTAGGTGTCACACTTGCTTTGACTATAAAGCGAGTAAGGACACCACCTTTTGGCCTCATGTTTTAACCCATAACCTCTTCTCCAAACCGGATCTAGTGCCACCATATAGTCGGAATTTAAAGCTGCTACCGCTTCCTCAGCTCCACACCGGCGGAGACACTCTACAGCACATGTTTGtcatattattattgtattatctcagtttttgttttttttggatgcATTGTGGATATTAATTTCATATGCTGGTTTGGAAAAGAAAGATCTCCCATTATATGTGATTTACATGTTATTTCTCAGGTTCCTATAGTTTGCTTATTTGCCACGGTATATTATTTTAGTATGTAATCACGTGTGGAAAACATAATTTGGCCTTTTCTGTGAAACTGGATTTCTAAAAGGAGGTGTCTTGGGACGCAAAGCGGACGGGACTGAAGTGAACTTGAGGACCTTCAAAGTGGAATAGCCTAcatttgatatttatttttttaaatgagggcGAAATGATGCCTATAATTTATGCAAGTTGTATTGCAAAAAAATGGGAAACTGACATCGTCTGGTtgttttgtaaatatatatattatggacGGTTTTTATTTGAGACGCATTCGGGACAAAGCTACACAATCTTGTTATCAGGAGTACTTTTACTAATTTATATCTttgaatgtaaataaaataaaacgcgCTGGTATAGATGTACTGGCGGGGTATGGTATCCATTATTCAAAGGAGAAAATATTAAACTGTTTTCCCAACTATTA

Function

GO: NA

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97047 lncRNA upstream 244932 15100816 ~ 15163246 (+) True LOC120562980
XR_005639889.1 lncRNA upstream 244954 15100974 ~ 15163224 (+) False LOC120562980
TU97010 lncRNA upstream 405044 15000671 ~ 15003134 (+) True G72634
TU96925 lncRNA upstream 762390 14644376 ~ 14645788 (+) True LOC120562067
XR_005639683.1 lncRNA upstream 762937 14644841 ~ 14645241 (+) False LOC120562067
TU97071 lncRNA downstream 175850 15589897 ~ 15590158 (+) True G72680
TU97101 lncRNA downstream 422915 15836962 ~ 15844938 (+) True G72704
TU97106 lncRNA downstream 430263 15844310 ~ 15847320 (+) True G72705
TU97104 lncRNA downstream 431114 15845161 ~ 15847320 (+) False G72705
XR_005639697.1 lncRNA downstream 555130 15969177 ~ 16008811 (+) False LOC120562129
XM_039806393.1 mRNA upstream 534065 14762370 ~ 14874113 (+) True dnah5
XM_039806394.1 mRNA upstream 535339 14762504 ~ 14872839 (+) False dnah5
XM_039806395.1 mRNA upstream 535339 14786544 ~ 14872839 (+) False dnah5
XM_039805511.1 mRNA upstream 703354 14703423 ~ 14704824 (+) True LOC120562066
XM_039804932.1 mRNA upstream 775457 14626478 ~ 14632721 (+) True LOC120561718
XM_039804827.1 mRNA downstream 139494 15553541 ~ 15560292 (+) True irx4a
XM_039806257.1 mRNA downstream 205469 15619516 ~ 15653052 (+) True LOC120562533
XM_039807297.1 mRNA downstream 243194 15657241 ~ 15675222 (+) True slc6a3
XM_039807219.1 mRNA downstream 268372 15682419 ~ 15707502 (+) True LOC120563110
XM_039805971.1 mRNA downstream 1081679 16495726 ~ 16508741 (+) True mboat1
unassigned_transcript_349 other upstream 381525 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 777715 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 981998 14425794 ~ 14426180 (+) True G72506
TU96805 other upstream 1231551 14175849 ~ 14176627 (+) False LOC120562174
TU96779 other upstream 1263882 14133611 ~ 14144296 (+) False cmc1
TU97064 other downstream 139417 15553464 ~ 15555952 (+) False irx4a
TU97163 other downstream 604312 16018359 ~ 16072201 (+) True G72750
unassigned_transcript_351 other downstream 1954656 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 2035538 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 2042596 17456643 ~ 17460327 (+) False ubxn11

Expression Profile