RNA id: XM_039806974.1


Basic Information

Item Value
RNA id XM_039806974.1
length 3390
RNA type mRNA
GC content 0.46
exon number 6
gene id cacng8b
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23304312 ~ 23322761 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCATCAATGATCAGCGAATCTTTTTTACTGAGCGATGGATGGTCCCGCCATCCGTTGGTCTGGTCACGCCTCCTCAGCCCCTTCGCCTCCCACGTGcagcagagcagTGACCATGGTGCAAGTTTTCTGCTAACAGAGGACGGACGGATAGCGGGACAACCGTCCAAGCCACAACCTCCAACAGCAACATCtttgagaaagaaagaaagagagagagagcaagtgaAAGAgggcaaaagagagagaacgagTGCAcgaaggagagagggagcggGTGAAAACAGTCGATGGATGCTGTCCGGATTGAGGGGACAGCACGTTCTTCACTGACGAGGAAAAGAAAGATTTCAAAATTGAGTCGAAGGATAGAAACTCGCCGTCAGGCATGGTGTGTGAGAAGGGGATCCAGATCCTTCTCACCACCGTGGGGGCATTCGCTGCCTTCGGCCTGATGACGGTGGCAATAGGGACGGACTACTGGCTGTACTCCCGTGCCCTCATCTGCAACAGCACAGCCAATGTTACCCAGGATGACCCCCATAACAAGGACAAGAAGGATCCAGGGGCGCTCACCCACTCTGGACTGTGGAGGATATGCTGCCTGGAAGGAGTAAAGAGAGGATCGTGTTCTCAGATTAACCACTTCCCAGAAGATGCAGACTTTGACCATGATGGGGCAGAGTATGTCCTACGGGTAGTCAGGGCTTCCAACATCTTCCCAATCCTCAGTGCCATCCTGCTTCTGATGGGAGGGGTTTGCATCGCTGCCAGTCGTTTCTATAAGAGCAAAAGGAACATCATCCTGGGGGCGGGAATTCTCTTTGTGGCTGCAGGTCTGAGTAACATAATTGGTGTGATTGTGTACATCTCGGCCGCACTGGGGGACATCTCTCCTAAGAAGGACGAGGATAAGAAGTGGCAGTACTCCTACGGTTGGTCCTTTTACTTCGGAGGTCTGTCCTTCATCATGGCCGAGATGGTGGGGGTGCTGGCTGTCAACATCTACATTGAGAAGAACAAGGAGCTGCGCTGCCGCTCGCGCACCGACATTTTCAAGAGCACCACGCACGCCATGCTCCGTCTGCCCAGCTACCGCTTCCGCCGCCGCTCCCGCTCTTCGTCCCGCTCCACTGACCCCTCCCGCTCCCGAGACCCCTCACCTgtaggggggggtgggggcaaAAACTTTGGTCTGCCCCCCTCTGCGCTGCTTTCCCAGGGCCCCATCTCAGTATCCACTTTACCAAATCCCCACTCTCGCTCCCACACAACCCTGGCTGGAGGCGACATCTCTCTCTACACGTTGTCCCGTGACCCCAAACTGGGGGGTTTGCCGCCCATGTATGGAACGGTGGACAGGGCCACGCTCTACCAGCTCCACAACTGCTTCCCAAAGgatggagggggagggggggtgatGATGAGTGGTACACTTCCCTCGCTTAAGTCCCACAACCCTTCCAATTCTTCCAACTCCAACGCACCAATGCCCAACTCGGTGGGCTCCGGCCCTCCACCCTTCAACTCGTCCACAGTAGACAGGGAGCGAGGGATGGGGACTCTGGACAGGCTgaagggagacagggagagcaACTCCAACACCCTCAATAGGAAGACAACGCCTGTGTAGAGAGAAAGGGGTGTGAGAGGGGGAAGCGAGAAggaagggagagaaggaagaTGGGTAGTAATGAAAGAGGGAAGATAGAGAGAagcactgtgtttgtgtggctcAACAGGAAATAGATAGCAAGACAGGTGCAATGCTAAAGCTCTCCCTCCATGTTCACTGTTAGTTAGTCTGCTCAATCTCACTGAGAACAAAAAGAAGATTAGTAATAACAGAgtgataataacaacaacaataaactttcacaataaaactattttgatattttaacgTGCTAGAAatgatttattttgttaatGATCAAACGCAATTAACCTTGGGCTATTATAAAAAGGTTTCACATATTTTTTGTGCAATATTACTGCTAATTAATCAGATCATCATTAATGTAAAATTGTTGTTGTGATTATTCTTAGCGTTATTACAGGCTAGCCAGATTTGCAAACACTATATAGTTTGGAATGAAAATTTCAATTTCCATGTTACTTTCACTCTAATTTTGGATCTCAACGACTTTTACTGTGAATTTCTTCCATGCAGAGCCACTGGGACTGTCAGTGatctgtgtgtaactgtgtcaaAGTGTCAAGCATGAGTGTGCACAATATGTGGGAGAATGAGGGCCTGTATTTTTTTAACCCCCATATTATATAAATTTCATTTATAACATGAAGTCAGATTTGAATACTGTAAATTGTCTTCCAATATTGATACTGAAATGCAACAATAATGTGAGTGATTGAGACAACTGACCAACTTCGTTGTTATTATAAGTCTGAGTTTTCTATGGGCCTCTGTTAGTCTAATTTCCATTCTAATCAGTGTTAACAGTAGTACTTGTAGCTATAGTCGTGTTGAAGATGTTTGTTCTTGGGCATTAACAGAAACCTCTGACTGGAGGAAGCAGAAAATAGAGATATAGAATAATACATTTGTACAGATTCAGGTAAAGTTTACTGCCTgagcagaaaaacaaaaaacctaaTCATTTTTTTCTATGAAGAGTCCCAAAGTGAGACATGCAACTCATACTtttcagtggcaaaaaaaaaaaagacaatatgtaTATGTGGGTTGAGAGGGTTTAAAAAACACTATAGAGAAAACTTTTGAAAAGATACATGTACATTGTAATTTACGCATACATATATTTGTAAAGTCTATAGATTCGTTTTTCGGGACCACTGTTCAAACTGGGTATGCATTTTGGGCTGTTTTGTTCCCGGTGCCCTCCCTGGACTCTTGTTGGGTGGTTTCATCCGCCAACCCTGCGCCGCCATACCTGCTCCCCCTGCCAGATTTACCACAGAGACGACCCCTAACCTCCCCAAAGATTCTTTTCACTGTGCTTCCCTCATGACCGCTGACTCCTGAGTCTGAACTCTGACCTGATCTGTTTATGTTGATGAGAATGTAAACACATGTAAACAACCCCCACCCCACCTCTCTCTTCTGAACTGTCCCGAGTGACTGCAGATCCGGGTTGAAACCATGGACACACCGCTACATGATATAATGaagaagcaaaacaaaacaaccagACGCTTCCAGATTCTATGCGTTTTCATTACTTTGATTTAATTTCAGAAAAAGAATAATGTGATAAAAACTGCACACAGATAGCATTTATGTGGGCAATATGAATAGTATGTAGTTGAGAATAGATATATCTAGACAAATGATTATGGTTTATCTAAATGTGTGATAAACTTAAACACTGTATTGCACgaagtttataaaaaaaacaataacagacATA

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100533 lncRNA upstream 162129 23143942 ~ 23144165 (+) True G75155
TU100360 lncRNA upstream 223155 23079812 ~ 23083139 (+) False LOC120562293
TU100419 lncRNA upstream 287699 23016807 ~ 23018595 (+) True G75077
TU100410 lncRNA upstream 311588 22994420 ~ 22994706 (+) True G75069
TU100406 lncRNA upstream 318972 22982892 ~ 22987322 (+) True G75065
TU100574 lncRNA downstream 5481 23328242 ~ 23328629 (+) True G75192
XR_005639637.1 lncRNA downstream 9079 23331840 ~ 23332756 (+) True LOC120561704
TU100579 lncRNA downstream 17085 23339846 ~ 23342677 (+) False G75196
TU100578 lncRNA downstream 17331 23340092 ~ 23342677 (+) True G75196
TU100582 lncRNA downstream 24079 23346840 ~ 23350767 (+) True G75197
XM_039807261.1 mRNA upstream 4269 23289137 ~ 23302025 (+) True cacng7b
XM_039806978.1 mRNA upstream 19342 23269123 ~ 23286952 (+) True prkcg
XM_039806977.1 mRNA upstream 19342 23269124 ~ 23286952 (+) False prkcg
XM_039806979.1 mRNA upstream 19342 23270791 ~ 23286952 (+) False prkcg
XM_039806476.1 mRNA upstream 49630 23205948 ~ 23256664 (+) False LOC120562649
XM_039805227.1 mRNA downstream 55844 23378605 ~ 23382673 (+) True rcvrn2
XM_039805226.1 mRNA downstream 70238 23392999 ~ 23395671 (+) False isoc2
XM_039805225.1 mRNA downstream 70242 23393003 ~ 23395671 (+) True isoc2
XM_039805932.1 mRNA downstream 73173 23395934 ~ 23401710 (+) True foxj2
XM_039806510.1 mRNA downstream 97586 23420347 ~ 23426645 (+) True sbk3
TU100365 other upstream 404246 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 486241 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 638750 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 683210 22616972 ~ 22623084 (+) False arnt
TU100710 other downstream 168364 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 441554 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 444424 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 445472 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 551155 23873916 ~ 23879415 (+) False LOC120563047

Expression Profile