RNA id: XM_039806977.1


Basic Information

Item Value
RNA id XM_039806977.1
length 4286
RNA type mRNA
GC content 0.46
exon number 17
gene id prkcg
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23269123 ~ 23286952 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctctctctctcttcctctctttccatctctcatCCTCTTCTTAGTAAAAACAGAATCAATCTTGGAAAGAGAATACCACCTCTCTAtctcgtcctcctcctcaccctgCCTCTGGGTTAACGGATATATAACACTTTACTCTTCTATCTTTGGTTCCTAGAAAGCTTGAATCTCCTGAAACGCTCGTTGCTTTCGCTTTTGCTTTTTGTTGTAAtaggtttttcttttctttttttcttttttacattttgtctgATTCTTTTCTAATTACCACAGCACTACTTATCTCGGTCTTTTCTTCCGgtcgctcttttttttttaggtgaaCGGCTACAGGTGTGACACCCTAGCCTTTCTTTTGAAGTGAGCCAAACGAGGCAAAGAaagggggagaggaagagaagaaagctGTCCTTTAGTCGAGCCTTTCTTTCTAAATCACCACAAATTCAgTATCCTCCAGGCATCATGTCGACCCCGATCTCcccttccccctccctctccccgtTGACACTGGCCTCCCCTACATCGGCAACCTCCCCCGGTCCCTCCCCTCTGCCCTCGCCCCTCTCCCCTCCACCCAGGGTGCCTGTGTTCCAGAGGAAGGGAGCGCTCAAACACAAGAGGATTGTCGAGGTTAAAGACCACCAGTTCACTGCCCGCTTCTTCAAACAGCCCACCTTCTGCAGCCACTGCACCGACTTTATCTGGGGCATCGGCAAACAGGGATTCCAATGTCAAGTTTGCAGTTTTGTGGTCCACAAAAGATGTCACGAATTTGTCACCTTCACTTGTCCTGGCTCTGTGGCGGGCCCCAGACCAGAAGACCTGAAGAGTCAGCACACATTTAAAGTCCACACTTACTCCAGTCCCACCTTCTGCGACCACTGTGGCTCGCTGCTGTACGGCCTCATACACCAGGGCATGAAATGTGGCAGTTGTGACATGAACGTCCATCGACGGTGTGAGACCAGTGTTCCCAGTCTCTGTGGCCAAGACCAcacagagaagagagggaggatcCACCTGACTGTCAGAGGAGAGACGGAGGATGTCTACGTCACTGTGCGGGAGGCTCGTAACCTGATGCCCATGGATCCAAACGGCCTGTCAGACCCGTATGTTAAACTCAAATTGATTCCAGACCCGAAGAGCCACAGCAAACAGAAGACCAAGACCATCCGCTCAACACTTAATCCCGTCTGGAATGAGAGTTTCACCTTCTCAGTGCGTGGTCACCAGTGGGACAGGCGTCTGTCTGTGGAGGTATGGGACTGGGACCGCACGTCCAGGAATGATTTCATGGGAGCGCTGTCATTCGGAGTGAGTGAGATCTTCAGGCGTCCTATCAGTGGCTGGTTCAAACTCCTCGCCCAAGATGAGGGAGAGTACTATAACATCCCTGTGCCAGACCCAGATCTGCAGGAGCCTCAGCCAGACGGCACAACACCCTCTTTGCCTCAAGCACTACCTGCCTCGCTGCCTGAACCGTTCCCTGCAGCCCTGTCCCCAACCCCTGTACCACCCTGCCCACCAGTCCACACCCCAGGCCCTGCCAAAGTGAAAGTGGGCATCCTTGACTTCAACTTCCTCATGGTGCTTGGCAAAGGCAGCTTTGGCAAGGTGCTGCTGGCAGAGGAGCGAGGCAGCGAGCGTCTGTTCGCCGTGAAGGTGTTGAAGAAAGACGTTCTCTACCAGGACGAAGACATGGAGAGCGCCCTGGTGGAGAGGAGGGTTCTGGCGCTTTCCTCTCGCCCTCACTTCCTCACATCACTCTACTGCGCCTTCCAGACTGAGgacCGTCTGTATTATGTAATGGAATACGTCAACGGAGGAGACCTGATGTTTCACATTCAGATAGTCGGCAAGTTCAAAGAGCCTCATGCAGCATTTTATGCAGCAGAGATAGCGGTCGGCCTCTTCTTCCTTCACAGCAAAGGCATCATCTACAGGGATCTGAAGCTGGATAATGTGCTGCTTGACAGCGAGGGCCACATAAAGATAGCTGACTTCGGGATGTGCAGGGAGGGCATGTTAGAGGGCGACACCACGCACACTTTCTGCGGCACTCCTGACTACATCGCCCCCGAGATTGTGGCATATCAGCCCTATGATAAAGCAGTGGACTGGTGGTCCTATGGAGTACTGCTGTATGAAATGCTGGCAGGACAGCCACCATTTGATGGTATTGACGAGGATGAGCTGTTTCAGTCCATCATGGAACAGAGTGTGGTATACCCGAAAAATCTCTCTCGTGAAGCTGTCGCTATCTGCAAGGGACTCCTGACGAAGCACCCGGCCAAGCGTCTGGGTGGAGgacaggatggagagagagaaatcaggGAGCATCCGTTCTTCTGCTGGATTGACTGGGACCGTCTGGAGAGACTGGAGATCCCAGCGCCCTTCAAACCCAGAACTGGTGGGAGAAAAGGTGAAAACTTCGACAAGTTCTTCACAGCAGCTCCACCAGCTCTCACTCCCTCTGACCCGGATATACTAGCAGCCATCAACCTGGAAGACTTCCAGGGCTTCACCTTCCAAAACCCAGACTTTGCCCCCTCGCCTCTCACCGCTGTTTAAAAACGGCTCCCACACTTGCAAACATTTCCTCTGAGGGTACCCAAAATACCCTGGTAATCCCCCTAATAGTAGTTTTATaacaaagaatttgaacatgaGAGCTAGCAGCAAGTATTAAAGACACCTCTCATAACCAAATTCTGACGTTTACATGAAAATGCCAAGGCACCTTTATATTCATGCACTCTCTTTGATGCATGTATTATATCGATTGATAGTCACGGAATATGTTGCAGCAATGCAAACAAAGCCAGTATTATGCTTTAGGTTTCCATCTTAGAGTTTTTTTGGAAGACATCCCTTAATTTGATATAAGAGTACTGTAGTATGAACTTGAGAAATAAATCTCTTTTGCATGCAGTGTTTTAGAATGATTTGCTTTGACTCACTAATTTTCCAGCGTTGTAGATTATCCAAGGAAATATACCAGTGTAACTTTACAaccaatttatttaaaaaagattttGTTACTCTGATTAGAATCATCTTGTATATTGAGAAGCTGtattttacaaaacaattactaGTCAGGTTTTTCTCATACAGGCCAGATAGCAGGCAAAACAAGTcactttttaatcattttacagttcatacacacaaatacaaaaatgtttctTAGCAGGTCAAATACATTCATACACAGTACAGGAATTCAGCATCAGAATCATTATATTGTGTCTTTCTAAATATCTATCTcactctgtgtatgtgtgtgtgtgagagagagagagagagagagagagagagagttgacaCTTTGATGATGCAAACTGAGCGAGtagccttttttatttattagacTGGCATCCTGTGGAAGAGCTCAGTCAGGTTCCTCTGGCCTGGCCTGAACTCTCAGTTTAACGTCACACCGGTGACCTCAGATCAACCACAGTGATGCTGAAACAACGGACCAGGCACGATGTGACAGTTAATGTAGGCTGCAGTGCTGCCTCCCCCCAGCTCATGCCCACTCTGCCTGGCTCTATTGTCACTGGGAGGAAGTCCTTACATCACTGCCACAGTTTGGgctgcattattttttattcacaggtttttgttttctctaATATTCTTGAGCAAGCTGCGGGCCTATCCGCATtgcaatatacagtatctgtgcTCCTTAATGACATCATACAACactaaaatatgtatttgcAATCTTAGAAAATATGCCTCTTAATAATGTTTTCAAGAAGCTTGTACAGATACAAGGATTATTTTCGTGGTGTATACCATGAAGCTTTTTGCTGTATAATGACGTACTCCCAGCATTGATTAGGCGTAATTAAAAGTGAGGCTCAATGGGACTGTTCAATACATGGAAAAATAATAGCAGCACTGTCATTAAACACTATCTGAGCAGGGCAAGTGCCTGCAAATATACAGTTTAATAATCCCATTTCAGTGGTCTTATCTCAGAAACCAGCTGGTTATTTCACACCATCATTCTGAGGAGCATTTGCTTTaagtgcgcatgtgtgtgtcccTTTAATAGTGGCCAACTGTAAAAGGGCATTTCATCTGATCGCCTTAGCTCAGTTTGACTTGAGGTCAAATGTGACAACACACAATAACGATAGGCAacacaataatatataatacaatagATAATGTATGCATTTATGTATCTGTTAGTTAACTTCTGTTTTTATCTGCTGGAAAAAGAATGTTGAAATAAACTTActgaaaaaaatca

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100533 lncRNA upstream 124959 23143942 ~ 23144165 (+) True G75155
TU100360 lncRNA upstream 185985 23079812 ~ 23083139 (+) False LOC120562293
TU100419 lncRNA upstream 250529 23016807 ~ 23018595 (+) True G75077
TU100410 lncRNA upstream 274418 22994420 ~ 22994706 (+) True G75069
TU100406 lncRNA upstream 281802 22982892 ~ 22987322 (+) True G75065
TU100574 lncRNA downstream 41290 23328242 ~ 23328629 (+) True G75192
XR_005639637.1 lncRNA downstream 44888 23331840 ~ 23332756 (+) True LOC120561704
TU100579 lncRNA downstream 52894 23339846 ~ 23342677 (+) False G75196
TU100578 lncRNA downstream 53140 23340092 ~ 23342677 (+) True G75196
TU100582 lncRNA downstream 59888 23346840 ~ 23350767 (+) True G75197
XM_039806475.1 mRNA upstream 12460 23205948 ~ 23256664 (+) True LOC120562649
XM_039806476.1 mRNA upstream 12460 23205948 ~ 23256664 (+) False LOC120562649
XM_039806067.1 mRNA upstream 127372 23129094 ~ 23141752 (+) True si:dkeyp-69b9.3
XM_039807222.1 mRNA upstream 145811 23118098 ~ 23123313 (+) True LOC120563112
XM_039807261.1 mRNA downstream 2185 23289137 ~ 23302025 (+) True cacng7b
XM_039806973.1 mRNA downstream 17360 23304312 ~ 23322761 (+) True cacng8b
XM_039806976.1 mRNA downstream 17360 23304312 ~ 23322761 (+) False cacng8b
XM_039806972.1 mRNA downstream 17360 23304312 ~ 23322761 (+) False cacng8b
XM_039806975.1 mRNA downstream 17360 23304312 ~ 23322761 (+) False cacng8b
TU100365 other upstream 367076 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 449071 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 601580 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 646040 22616972 ~ 22623084 (+) False arnt
TU100710 other downstream 204173 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 477363 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 480233 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 481281 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 586964 23873916 ~ 23879415 (+) False LOC120563047

Expression Profile