RNA id: XM_039806987.1


Basic Information

Item Value
RNA id XM_039806987.1
length 1825
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC120562991
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 9088184 ~ 9101502 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTATTGACAGTGAATGCAGCGTCAAAAATAACGTCGGATTAGTGCTTTGAACGTGTGACGTCGCAGACGGGCTCTGATGTGTGGACTAGAAATATTTATCTGAGGCATTTGGAGCAACAGACAGACACTATCGGCGTCAGCTTCACTGCAAACTGTGTGACAGGCTGGTGGTGTACAGCCAGGATGTCCTATATGAGCGCTGACAGCAGCTGGTCCCAGCCAAGGGACTTTGGCAGCCTTATCCAGACATGCAGCTCCAACATCCAGAAGATCAGTCAAAACTCTGGTCAGATCAAAAATCTCCTCCACCAGCTGGGGACGAGACAGAAAACCTCAGAGCTCCAGGAAAGGctCCAACAGCTCCAGCACTACACCAACCAGCTGGCTAAAGAAACCAACAGACACCTGAAGGAGCTGGGGTCACTGCCCCCACCACTGTCTCCATCAGAACAGAGGCAGCAGAAGCTGCAGAAGGAGCGTCTGATGAGCGATTTCTCCGCAGCCCTCAACAACTTCCAGGTGGTGCAGCGGAGGGCAgctgagaaagagaaggagtcGGTGGCCAGAGCTCGAGCTGGCTCCAGAGTCATGGGAGATGGAGGCAATGTGAACGAACAGCTGGTTACATTCGAAAAGGAAGATGAGTGGAACCAGAGCCAGACTCAGACTGAGGAGCCCACCATCACAGAGGAGGACCTGGATATcatcagggagagagagactaacATCAAACAGCTGGAGGCCAACATTATGGATGTGAACCAGATTTTCAAGGACCTGGCTGTGATGATCCACGATCAAGGAGAGATGATTGACACCATTGAGGCCAACGTGGAGAGTGCTGAGGTCCATGTAGACAGAGGGGCCGTCCAGCTGCAGAAGGCAGCCCATTACAAGAGGAAGTCCCGTAAGAGGATGTGCATGCTGGCCATGGTGCTGTCGCTGGTgctcatcatcctcatcatcatcatctggcAAGCCCTCAAATAAGAGAAGCACACTTTCACATGAcatccaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaaaatgcTAAATTTGACTTTCCTTACTGTGCTTGACTGAATGTggattgtactgtatttattttgggGTAAATGGCGGGAACATGAATATGTTTTGGGTTTTAAAAGGCTAACAACATAACAGATCTGCCAATATTTTGTGTTGATAATCAAGATTTTTGTTATTTCTTTAGTCTATTGATAAATTGACAAGTATTTGGCGTTTCCGCTCGTAGTTTGGAACATTAAAACTCCACTGAGCCAATGTATGACTACTGCTACCACTACTGCTACTAATAACACTAACTTATGAATTTTTGGAtgatctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagataaatAAACCCTACATTCCAATGCAGAAAAAGTACAATTTTCTTCAATGTAACCTTTGTCACTTCTTTAGGACTGTCTCATCAAATGCTATCTTGCACAattttatatacagtaagtaACCCTGTCTTGTTTGAATATGAAAGTGTATTCCTGATATAAAAAGTGTCTTACCTATAAGAATGTTAAAAGACAAATATCACCTGTTAGCAGTGATCAGAATGTCTGTCCTTAGTAAACTGTTTGTTTCACTGGCTCTGCCCACCTGAAAGAGAATTTAATACAGTTCCACCTGATCAAGTGC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95576 lncRNA upstream 311681 8770205 ~ 8776508 (+) True LOC120561899
TU95570 lncRNA upstream 319125 8768688 ~ 8769064 (+) True G71475
TU95571 lncRNA upstream 322055 8765894 ~ 8766134 (+) True G71476
TU95558 lncRNA upstream 344399 8743528 ~ 8743790 (+) True G71463
XR_005639619.1 lncRNA upstream 440480 8646964 ~ 8647709 (+) True LOC120561615
TU95621 lncRNA downstream 21661 9123163 ~ 9125732 (+) True G71517
TU95622 lncRNA downstream 21740 9123242 ~ 9125732 (+) False G71517
TU95620 lncRNA downstream 21820 9123322 ~ 9125732 (+) False G71517
TU95667 lncRNA downstream 218950 9320452 ~ 9320696 (+) True G71553
TU95668 lncRNA downstream 222315 9323817 ~ 9324017 (+) True G71554
XM_039805233.1 mRNA upstream 313367 8760046 ~ 8774822 (+) False LOC120561899
XM_039805857.1 mRNA upstream 583737 8454764 ~ 8504452 (+) True LOC120562241
XM_039806352.1 mRNA upstream 703569 8364356 ~ 8384620 (+) True pomgnt2
XM_039806353.1 mRNA upstream 703569 8366524 ~ 8384620 (+) False pomgnt2
XM_039805236.1 mRNA upstream 780124 8283381 ~ 8308065 (+) False ano10a
XM_039804863.1 mRNA downstream 14209 9115711 ~ 9123087 (+) True popdc3
XM_039807105.1 mRNA downstream 26348 9127850 ~ 9144754 (+) False bves
XM_039807106.1 mRNA downstream 26348 9127850 ~ 9144293 (+) True bves
XM_039805944.1 mRNA downstream 46113 9147615 ~ 9190089 (+) True hace1
XM_039805945.1 mRNA downstream 46115 9147617 ~ 9190089 (+) False hace1
unassigned_transcript_348 other upstream 238469 8849632 ~ 8849720 (+) True trnay-gua_42
unassigned_transcript_347 other upstream 238852 8849249 ~ 8849337 (+) True trnay-gua_41
unassigned_transcript_346 other upstream 239618 8848483 ~ 8848571 (+) True trnay-gua_40
unassigned_transcript_345 other upstream 240708 8847392 ~ 8847481 (+) True trnay-gua_39
unassigned_transcript_344 other upstream 241034 8847067 ~ 8847155 (+) True trnay-gua_38
TU95730 other downstream 1105913 10207415 ~ 10208197 (+) True G71610
TU95885 other downstream 1684152 10785654 ~ 10867832 (+) False LOC120562569
TU95893 other downstream 1718793 10820295 ~ 10821417 (+) True G71743
TU95894 other downstream 1718793 10820295 ~ 10821500 (+) False G71743
TU96068 other downstream 2497535 11599037 ~ 11616242 (+) True G71896

Expression Profile