RNA id: XM_039807001.1


Basic Information

Item Value
RNA id XM_039807001.1
length 5722
RNA type mRNA
GC content 0.54
exon number 17
gene id trim33l
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38908049 ~ 38945175 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCATGGTTCCGAGAGAGAGTAGGTCGATCCAGCGGCTGCACAGATTGCACATAAATAAGAGTTGAACCCGGGTCCGTTTGCGGGCCTGTGGACCGGTACACCATCGAATAACCGCCGTCAAACCCGAACAAACGGAGATATGGAACTTTAAAACAGATTTGTTCACGTGTTTTGTTATTCTTCTGATGCCGGAGAGTCTGTGCACGCGATCACACGGAGAAAACGGACTTCTCTCTTCAACATGGAGATACCAATCAGTCAGCAGTGCAGCAGCTGTGACGCGCCGGCCGCCAGATGTTGGTGCGTGGACTGTAACGAAGCGCTGTGTGACGTCTGCGTGTCGGCGCATCGCAGAGTGACCGTCACCAGATCTCACCGGATCCTCAACCAGCCGCAAGAAGGAGGCGTCTCGACTTGTCCCACCAAGTTCTGCAGACTCCACCCGTCGGAGCCGCTCAAACTCTTCTGCTTCACCTGCAACATGCTCACCTGCAGAGACTGCCAGCTCACGGCTCACATGAACCACAGgTATCAGTTTGTCAGTGAAGCGTTGGACAGTTTGAAGAAGGAGCTGAAGGATTGTGTTCGGCCAATCAGAGAACAGCGAGACAACGCGTGGAAGAGTCTGCAGGACATGGAGACCAGgCTGCGGGATATCGCTGACAGCGAGGCCAATCTGTCGTCTGAGCTGCAGCGCTCGTACTTGTTCCTGACTCAACAAATCAAAACGAGGATggaagacattttgaaaaatgttaaGACGGTTTGTGAAACGGAGACCCAGCTGATTCAGACAAAGATGAACAAGTTGAAGCAGCTGCTGAAGGATCAAGATTCGGTCGCTAAATTCACCGAAAATGCCCGAAAAAGTAACGACGTGTCGACCCTGACTGCCTACAATGTTCAGATCAAGTCTCATGTGAAGGCTTTCCACAATCTGAACCTGTCTCCTCCTCAGCGTATGTCCCAGCTCTGGGTCAGCACTGACAAGGTGTCACTGGAGGCCATTTTGAACTTTGGTCGACTCAACGTTAATTGGGTCCCTTTCTCCGTCTCAAATACCTCCAATCAGAACGCTccatcatcctcctcttcctctccctccctcgcctctccctccccttcctctccctctctcgcctctccctcctcttcctctccctgtcCGCCCCCCCTCGGTGGACCCTCCCCCCAAACCAGGACTCTCATCTCGCCTCCGGCTAAATGTTCCTCCACGACATCGACGTCCTGTCCCAGCCAGACGTTTCTATCCACTTCCTCTTCTCCGTCTTTAGTCCCGCCCCCTCCAGACCATCTGGCTCCATCCCAGAAGACGATCTCCGATCAGTTCGTGACTCCGCCTCTGAGAACCGCGAACACAGACTCACCTGTTCCTCCCAACTGTCCCGCTACTTCCTGGAAGTCCTCGTCCAATCAACAGAGTCTTCCTCCTACATCTTCCAATCATTCCAAAGCTCTCATGACAGCGAGCGTCACTCAAACGGTCCGGCATCcgaagaaacacagacagacagtttctGACTCCGAGAACAGCCAGCGTCCCCGCTTCGCCGTCCTCGAACTCGTCCAACAGTCTCTGGTTGCTCAGCAACCGGCCACTGCCGCCGTGCTGCTGAGCAACACTCAGAGCGCGTACCAGGTGTCCTGCTTCGCGCTGCTGCCGGCCGCACTGCCGGCCACGCTGCCGGCCGCGCGGCCGCTCAGGCAGATAGCACCAGGAAACACCGGCCCCGAACCACAGAAGAGCCTGATGGGAACTATCGTCCCAGTTTCAACCCCAGGACAGTTGACTCCGGTCCCCGCCCCCATTACTGGAAACCAGATCTCTGTCGTGCCGAGTCCCACGGCGGTGCCACGCCAAACGCTGGAAGAACAGCATCAACGTCTGAAAGAAGTAAACTCCTCTTCAACCAGCCACGCTGCGTCACCGTCCTGCGAGCAGCGTCTCCGCCCGGATATCGACCCTCGGCCCTCTTCTCccaaacaacagcagcagcagaacaatCCGGTGGTGAGGGCCGTGGCGGACTCCGCCTGCGACGGTGGCGTGCAGCAGTTCGCCCCGAGGCAGCAGGAACCTGCAGAGAACGAACCCACCTCCACCATGTCCGAAGAACTGTCGCCTGCAGGAGAACCGTCTGCAGCTGATGCATCGGACAGATACGCAGAAGAACGAGAAGCATTGGACAGAGACACTGAAGTCTCGGACAGAGATGCTGAAATGGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTAACGGACAGAGATGCTGAAATAGTCTCAGAAAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGCAGTCTCAGACAGAGATGCTGAAGTAGTAACGGACAGAGATGCTGAAGTGGTCTCGGACAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAACGGTCTTGGACAGAGATGCTGAAACGGTCTTGGACAGAGATGCTGAAACGGTCTTGGACAGAGATGCTGAAGCGGTCTCGGCCAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAATGGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGAAAGAGATGCTGAAGTAGTCGCGGACAGAGATGCTGAAATAGTCTCAGACAGAGATGCTGAAATAGTCTCAGACAGAGATGCTGAAGCAGTCTCTGACAGAGATGCTGAAGTAGTAACGGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAATGATCTCAGACAGAGATGCTGAAGCAGTCTCTGACAGAGATGCTGAAGTAGTAACGGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAGCAGTCTCTGACAGAGATGCTGAAGTAGTAACGGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAGCAGTCTCTGACAGAGATGCTGAAGTAGTAACGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTGGTCTCGGACAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAGCAGTATTGGACAGAGATGCTGAAATAGGCTCTGACAGAGATGCCAAAGTAACGGACAGAGACGCTGACTCATCGGACAGACACCCCGTAGTATCGGACGGAGACACCGTAGTATCGGACGGAGACACCGTAGTATCGGACGGAGACACCGTAGTATCAGACAGAGATGCTGATGAACTTGAACTTTCACTTGAGGTCACGGAAAGTGAAGCTGAAGAACCTGCAGCTGAAGCATCGGAGACAGACGCTGGAGTGTCTGAAGCAAACGCCGGAGTATCGGACAGAGACACCGTAATATCGGACAGAGACACCATAGTATCGAACAGAGACACCATAGTATCGAACAGAGACACCGTAGTATCGGACAGAGACACCGTAGTATCGGACAGAGACACCGTTGTATCGGACAGAGACACCATAGTATCAGACAGAGATGCTGAAGTATTGGACAGAGACACCGTAGTATCGGACAGAGATGCTGAAGAATCGGACAGAGACACCGTAGTATCGGACAGAGACACCATAGTATCAGACAGAGATGCTGAAGTATCGGACAGAGACACCGTAGTATCGGACAGAGACGCCGTAGTATCGGACAGAGACACCGTAGTATCGGACAGAGACACCGTAGTATCGGACAGAGACACCGTAGTATCGGACAGAGACGCTGAAGAATCGGACAGAGACACCGTAGTATCGGACAGAGACACCGTAGTATCGGACAGAGATGCAGAAGAGCTTGATCTTTCACTTGAGGTCACGGAAAGTGAAGCTGAAGCATCGGAGACAGACGCCGGAGTGTCGAACAGAGACGCTGAACCTGAAATATCGGACGGAGACGCTGGAGTGTCAGATCGAGATGCTGAAGAACCTGTAGTGTCGGACGGAGAAGCTGGAATATCGGACGGAGACGATGGAGTGTCCAAGTGCAGTTCGAGCCAATGGCAGCCCAGAGTGTCTCTGTTCAGGCTGCCTGTGCCTTCGCAGCGCCACAAACGTCCCCTACCTTCTTTTCGTTTGCTCGCCGGCGAAGCTGATGATGAGATTTACCTGGAAGAGATGAGCCAGGAGACTCCGTCCCTCTCTGATGACCTCACAGATGACTCCACAGATGACTTCGGTATGCCGTCGCCTCCCGGCTCGCCTCCCGGCTCGCCTCCCGGCTCGCCTCTGGCTGTGCAGATGGTCGCCTGCTCCGCCTGCCGATTGGCCAACGCGTCCATCATCTGTATGTCCTGCGGCCGCGGATTCCACCAAGACTGCCACATTCCTCCGGTCCGTCCGGACATCATgtCGGACTGGATATGCTCGCTGTGCCAGGACCTGTCGGACCCCTCGGACCCCTTCCTGTCCCACCGCCCACAGAGACCTGCGAGTCTCGGCCTCAGTCTGCTCAACCAGAGGAGATGTGAGAAGCTGTTGCTGCTCCTGAAGGTGAAGGCCAGCAGTCGACTCTCTGAGggaGGGTGCGGTCGCCACGTCGTGGCTCACCTGGACTGGATGAAGGATCGTCTGACTCGCGGCTCACCTGCctatcagacagctgcagactTCCTGTCTGACGTCCGGAGGCTCTTCAGAGACGCTGCACCGGGTGACTCCTTTCTGAATAATCTGCAGAAGAGGATGAGGAGTTTGAGCGCGGCGTTTATGGCCGAAGAGAAGTCTACTGCCGGCGCGTCGCTCGGCGCCAACGTGGCCGCAGACGCACCAGAGAGcgaggggtcaaaggtcacggcGCAGGAAGAACCGGAAGTGATGTCATACGAGGCCAGACTGAAGGAGACGAGGAAGAGGCTGCGGGAGGCTCTGATGGACGTGTGTCTCTCCAAGAGGAGGAAGACAGAACCACCCTCCGAGGATTCTGGGAACTGAAGTTCAAACTGTCGGAGGGTTGGAGGCACTACAAGAGGAGGAAGATGGAACTTTTCCCTGAGGATTCTGGGAACTgaagtcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagggatacagctacggtcCAAAGTTACACTAAATCTCCCAAAATCTAAACTAACCTAATCTCATTTTAATCAGGAGGTCAACTATAAGGGTTGCACAATggcccacagacacacacacagaaaaagttGTATTTGTACGTTCAGTTCTTCAGactctgaagtgtgtgtgtgtgtg

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106836 lncRNA downstream 21471 38875190 ~ 38886578 (-) False G79772
TU106874 lncRNA upstream 30221 38975396 ~ 38982634 (-) True G79791
TU106877 lncRNA upstream 42729 38987904 ~ 38989799 (-) True G79793
TU106879 lncRNA upstream 58871 39004046 ~ 39005190 (-) True G79795
TU106882 lncRNA upstream 63461 39008636 ~ 39008891 (-) True G79797
TU106863 lncRNA upstream 63946 39009121 ~ 39009971 (-) True G79787
XM_039807041.1 mRNA downstream 227569 38666267 ~ 38680480 (-) True nudt17
XM_039806198.1 mRNA downstream 385660 38516601 ~ 38522389 (-) True LOC120562485
XM_039807027.1 mRNA downstream 408392 38489974 ~ 38499657 (-) True LOC120563017
XM_039807028.1 mRNA downstream 408392 38492541 ~ 38499657 (-) False LOC120563017
XM_039806197.1 mRNA downstream 423184 38482155 ~ 38484865 (-) True LOC120562484
XM_039806200.1 mRNA upstream 162129 39107304 ~ 39142705 (-) True LOC120562487
XM_039806073.1 mRNA upstream 887978 39833153 ~ 39843176 (-) True LOC120562358
XM_039806072.1 mRNA upstream 956590 39901765 ~ 39923149 (-) True LOC120562356
XM_039806077.1 mRNA upstream 1180250 40125425 ~ 40175116 (-) True LOC120562362
XM_039806083.1 mRNA upstream 1235167 40180342 ~ 40201133 (-) True LOC120562374
TU106828 other downstream 28 38906780 ~ 38908021 (-) False G79767
TU106829 other downstream 28 38906780 ~ 38908021 (-) True G79767
TU106776 other downstream 227585 38672002 ~ 38680464 (-) False nudt17
TU106520 other downstream 583839 38321011 ~ 38324210 (-) False LOC120562482
TU106470 other downstream 702867 38201251 ~ 38205182 (-) True LOC120562477
TU106912 other upstream 152597 39097772 ~ 39138382 (-) True G79820
TU106997 other upstream 451086 39396261 ~ 39456639 (-) False G79872
TU106993 other upstream 488249 39433424 ~ 39456639 (-) True G79872
TU107259 other upstream 631488 39576663 ~ 39577939 (-) True G80027
TU107282 other upstream 834280 39779455 ~ 39849009 (-) True G80046

Expression Profile