RNA id: XM_039807003.1


Basic Information

Item Value
RNA id XM_039807003.1
length 5590
RNA type mRNA
GC content 0.54
exon number 15
gene id trim33l
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38908049 ~ 38945175 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCATGGTTCCGAGAGAGAGTAGGTCGATCCAGCGGCTGCACAGATTGCACATAAATAAGAGTTGAACCCGGGTCCGTTTGCGGGCCTGTGGACCGGTACACCATCGAATAACCGCCGTCAAACCCGAACAAACGGAGATATGGAACTTTAAAACAGATTTGTTCACGTGTTTTGTTATTCTTCTGATGCCGGAGAGTCTGTGCACGCGATCACACGGAGAAAACGGACTTCTCTCTTCAACATGGAGATACCAATCAGTCAGCAGTGCAGCAGCTGTGACGCGCCGGCCGCCAGATGTTGGTGCGTGGACTGTAACGAAGCGCTGTGTGACGTCTGCGTGTCGGCGCATCGCAGAGTGACCGTCACCAGATCTCACCGGATCCTCAACCAGCCGCAAGAAGGAGGCGTCTCGACTTGTCCCACCAAGTTCTGCAGACTCCACCCGTCGGAGCCGCTCAAACTCTTCTGCTTCACCTGCAACATGCTCACCTGCAGAGACTGCCAGCTCACGGCTCACATGAACCACAGgTATCAGTTTGTCAGTGAAGCGTTGGACAGTTTGAAGAAGGAGCTGAAGGATTGTGTTCGGCCAATCAGAGAACAGCGAGACAACGCGTGGAAGAGTCTGCAGGACATGGAGACCAGgCTGCGGGATATCGCTGACAGCGAGGCCAATCTGTCGTCTGAGCTGCAGCGCTCGTACTTGTTCCTGACTCAACAAATCAAAACGAGGATggaagacattttgaaaaatgttaaGACGGTTTGTGAAACGGAGACCCAGCTGATTCAGACAAAGATGAACAAGTTGAAGCAGCTGCTGAAGGATCAAGATTCGGTCGCTAAATTCACCGAAAATGCCCGAAAAAGTAACGACGTGTCGACCCTGACTGCCTACAATGTTCAGATCAAGTCTCATGTGAAGGCTTTCCACAATCTGAACCTGTCTCCTCCTCAGCGTATGTCCCAGCTCTGGGTCAGCACTGACAAGGTGTCACTGGAGGCCATTTTGAACTTTGGTCGACTCAACGTTAATTGGGTCCCTTTCTCCGTCTCAAATACCTCCAATCAGAACGCTccatcatcctcctcttcctctccctccctcgcctctccctccccttcctctccctctctcgcctctccctcctcttcctctccctgtcCGCCCCCCCTCGGTGGACCCTCCCCCCAAACCAGGACTCTCATCTCGCCTCCGGCTAAATGTTCCTCCACGACATCGACGTCCTGTCCCAGCCAGACGTTTCTATCCACTTCCTCTTCTCCGTCTTTAGTCCCGCCCCCTCCAGACCATCTGGCTCCATCCCAGAAGACGATCTCCGATCAGTTCGTGACTCCGCCTCTGAGAACCGCGAACACAGACTCACCTGTTCCTCCCAACTGTCCCGCTACTTCCTGGAAGTCCTCGTCCAATCAACAGAGTCTTCCTCCTACATCTTCCAATCATTCCAAAGCTCTCATGACAGCGAGCGTCACTCAAACGGTCCGGCATCcgaagaaacacagacagacagtttctGACTCCGAGAACAGCCAGCGTCCCCGCTTCGCCGTCCTCGAACTCGTCCAACAGTCTCTGGTTGCTCAGCAACCGGCCACTGCCGCCGTGCTGCTGAGCAACACTCAGAGCGCGTACCAGGTGTCCTGCTTCGCGCTGCTGCCGGCCGCACTGCCGGCCACGCTGCCGGCCGCGCGGCCGCTCAGGCAGATAGCACCAGGAAACACCGGCCCCGAACCACAGAAGAGCCTGATGGGAACTATCGTCCCAGTTTCAACCCCAGGACAGTTGACTCCGGTCCCCGCCCCCATTACTGGAAACCAGATCTCTGTCGTGCCGAGTCCCACGGCGGTGCCACGCCAAACGCTGGAAGAACAGCATCAACGTCTGAAAGAAGTAAACTCCTCTTCAACCAGCCACGCTGCGTCACCGTCCTGCGAGCAGCGTCTCCGCCCGGATATCGACCCTCGGCCCTCTTCTCccaaacaacagcagcagcagaacaatCCGGTGGTGAGGGCCGTGGCGGACTCCGCCTGCGACGGTGGCGTGCAGCAGTTCGCCCCGAGGCAGCAGGAACCTGCAGAGAACGAACCCACCTCCACCATGTCCGAAGAACTGTCGCCTGCAGGAGAACCGTCTGCAGCTGATGCATCGGACAGATACGCAGAAGAACGAGAAGCATTGGACAGAGACACTGAAGTCTCGGACAGAGATGCTGAAATGGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTAACGGACAGAGATGCTGAAATAGTCTCAGAAAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGCAGTCTCAGACAGAGATGCTGAAGTAGTAACGGACAGAGATGCTGAAGTGGTCTCGGACAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAACGGTCTTGGACAGAGATGCTGAAACGGTCTTGGACAGAGATGCTGAAACGGTCTTGGACAGAGATGCTGAAGCGGTCTCGGCCAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAATGGTCTCGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTAGTCTCGGAAAGAGATGCTGAAGTAGTCGCGGACAGAGATGCTGAAATAGTCTCAGACAGAGATGCTGAAATAGTCTCAGACAGAGATGCTGAAGCAGTCTCTGACAGAGATGCTGAAGTAGTAACGGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAATGATCTCAGACAGAGATGCTGAAGCAGTCTCTGACAGAGATGCTGAAGTAGTAACGGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAGCAGTCTCTGACAGAGATGCTGAAGTAGTAACGGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAATGGTCTCAGACAGAGATGCTGAAGCAGTCTCTGACAGAGATGCTGAAGTAGTAACGGACAGAGATGCTGAAGTAGTCTCGGACAGAGATGCTGAAGTGGTCTCGGACAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAGCGGTCTCGGACAGAGATGCTGAAGCAGTATTGGACAGAGATGCTGAAATAGGCTCTGACAGAGATGCCAAAGTAACGGACAGAGACGCTGACTCATCGGACAGACACCCCGTAGTATCGGACGGAGACACCGTAGTATCGGACGGAGACACCGTAGTATCGGACGGAGACACCGTAGTATCAGACAGAGATGCTGATGAACTTGAACTTTCACTTGAGGTCACGGAAAGTGAAGCTGAAGAACCTGCAGCTGAAGCATCGGAGACAGACGCTGGAGTGTCTGAAGCAAACGCCGGAGTATCGGACAGAGACACCGTAATATCGGACAGAGACACCATAGTATCGAACAGAGACACCATAGTATCGAACAGAGACACCGTAGTATCGGACAGAGACACCGTAGTATCGGACAGAGACACCGTTGTATCGGACAGAGACACCATAGTATCAGACAGAGATGCTGAAGTATTGGACAGAGACACCGTAGTATCGGACAGAGATGCTGAAGAATCGGACAGAGACACCGTAGTATCGGACAGAGACACCATAGTATCAGACAGAGATGCTGAAGTATCGGACAGAGACACCGTAGTATCGGACAGAGACGCCGTAGTATCGGACAGAGACACCGTAGTATCGGACAGAGACACCGTAGTATCGGACAGAGACACCGTAGTATCGGACAGAGACGCTGAAGAATCGGACAGAGACACCGTAGTATCGGACAGAGACACCGTAGTATCGGACAGAGATGCAGAAGAGCTTGATCTTTCACTTGAGGTCACGGAAAGTGAAGCTGAAGCATCGGAGACAGACGCCGGAGTGTCGAACAGAGACGCTGAACCTGAAATATCGGACGGAGACGCTGGAGTGTCAGATCGAGATGCTGAAGAACCTGTAGTGTCGGACGGAGAAGCTGGAATATCGGACGGAGACGATGGAGTGTCCAAGTGCAGTTCGAGCCAATGGCAGCCCAGAGTGTCTCTGTTCAGGCTGCCTGTGCCTTCGCAGCGCCACAAACGTCCCCTACCTTCTTTTCGTTTGCTCGCCGGCGAAGCTGATGATGAGATTTACCTGGAAGAGATGAGCCAGGAGACTCCGTCCCTCTCTGATGACCTCACAGATGACTCCACAGATGACTTCGGTATGCCGTCGCCTCCCGGCTCGCCTCCCGGCTCGCCTCCCGGCTCGCCTCTGGCTGTGCAGATGGTCGCCTGCTCCGCCTGCCGATTGGCCAACGCGTCCATCATCTGTATGTCCTGCGGCCGCGGATTCCACCAAGACTGCCACATTCCTCCGGTCCGTCCGGACATCATgtCGGACTGGATATGCTCGCTGTGCCAGGACCTGTCGGACCCCTCGGACCCCTTCCTGTCCCACCGCCCACAGAGACCTGCGAGTCTCGGCCTCAGTCTGCTCAACCAGAGGAGATGTGAGAAGCTGTTGCTGCTCCTGAAGGTGAAGGCCAGCAGTCGACTCTCTGAGGGTGACTCCTTTCTGAATAATCTGCAGAAGAGGATGAGGAGTTTGAGCGCGGCGTTTATGGCCGAAGAGAAGTCTACTGCCGGCGCGTCGCTCGGCGCCAACGTGGCCGCAGACGCACCAGAGAGcgaggggtcaaaggtcacggcGCAGGAAGAACCGGAAGTGATGTCATACGAGGCCAGACTGAAGGAGACGAGGAAGAGGCTGCGGGAGGCTCTGATGGACGTGTGTCTCTCCAAGAGGAGGAAGACAGAACCACCCTCCGAGGATTCTGGGAACTGAAGTTCAAACTGTCGGAGGGTTGGAGGCACTACAAGAGGAGGAAGATGGAACTTTTCCCTGAGGATTCTGGGAACTgaagtcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagggatacagctacggtcCAAAGTTACACTAAATCTCCCAAAATCTAAACTAACCTAATCTCATTTTAATCAGGAGGTCAACTATAAGGGTTGCACAATggcccacagacacacacacagaaaaagttGTATTTGTACGTTCAGTTCTTCAGactctgaagtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106836 lncRNA downstream 21471 38875190 ~ 38886578 (-) False G79772
TU106874 lncRNA upstream 30221 38975396 ~ 38982634 (-) True G79791
TU106877 lncRNA upstream 42729 38987904 ~ 38989799 (-) True G79793
TU106879 lncRNA upstream 58871 39004046 ~ 39005190 (-) True G79795
TU106882 lncRNA upstream 63461 39008636 ~ 39008891 (-) True G79797
TU106863 lncRNA upstream 63946 39009121 ~ 39009971 (-) True G79787
XM_039807041.1 mRNA downstream 227569 38666267 ~ 38680480 (-) True nudt17
XM_039806198.1 mRNA downstream 385660 38516601 ~ 38522389 (-) True LOC120562485
XM_039807027.1 mRNA downstream 408392 38489974 ~ 38499657 (-) True LOC120563017
XM_039807028.1 mRNA downstream 408392 38492541 ~ 38499657 (-) False LOC120563017
XM_039806197.1 mRNA downstream 423184 38482155 ~ 38484865 (-) True LOC120562484
XM_039806200.1 mRNA upstream 162129 39107304 ~ 39142705 (-) True LOC120562487
XM_039806073.1 mRNA upstream 887978 39833153 ~ 39843176 (-) True LOC120562358
XM_039806072.1 mRNA upstream 956590 39901765 ~ 39923149 (-) True LOC120562356
XM_039806077.1 mRNA upstream 1180250 40125425 ~ 40175116 (-) True LOC120562362
XM_039806083.1 mRNA upstream 1235167 40180342 ~ 40201133 (-) True LOC120562374
TU106828 other downstream 28 38906780 ~ 38908021 (-) False G79767
TU106829 other downstream 28 38906780 ~ 38908021 (-) True G79767
TU106776 other downstream 227585 38672002 ~ 38680464 (-) False nudt17
TU106520 other downstream 583839 38321011 ~ 38324210 (-) False LOC120562482
TU106470 other downstream 702867 38201251 ~ 38205182 (-) True LOC120562477
TU106912 other upstream 152597 39097772 ~ 39138382 (-) True G79820
TU106997 other upstream 451086 39396261 ~ 39456639 (-) False G79872
TU106993 other upstream 488249 39433424 ~ 39456639 (-) True G79872
TU107259 other upstream 631488 39576663 ~ 39577939 (-) True G80027
TU107282 other upstream 834280 39779455 ~ 39849009 (-) True G80046

Expression Profile