RNA id: XM_039807006.1


Basic Information

Item Value
RNA id XM_039807006.1
length 1833
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC120563002
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38257203 ~ 38259035 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atggcgcagaaaggagttcagctgaaccgggaaaccttctcttgttccatctgtctagatctactgaaggatccggtgactattccctgtggacacagctactgcatgaactgtattaaaagccactggGATGAAGAGGATCATAAGTACAGCTACAGCTGCCCTCAGTGCAGGAAGACGTTCACACCAAGGCCTGTCCTGTTGAAAAGCACCATGTTagcagatttagtggaggagctgaggaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcactggGAGGAAACTCAAAGCACACAAGTCCTGTCTGCAATGTCTGGCTTCTTTCTGTGAGCAACACCTTCAGCTTCATTATGAATCAGCTCCAtacaagaaacacaagctggtggagccgtccaagaagttccaggagaacgtctgctctcgtcatgatgaggtgatgaagattttctgccgtactgatcagcagcttatctgttatctctgcttaatggaggaacataaaggccacgacacagtctcagctgcagcagaaaggactgagaggcagaaaaGGCTCGAGGGGAGTCGACAAAACATCCAGCggagaatccaggacagagagaaagatgtgaagctgcttcaacaggAGGTGGAGGCCATCAATCGCTCTGCTGttaaagcagtggaggacagcaAGAAGATTTTCACTGAGCTGATCCGTCTCATagagaaaagaagctctgatgtgaagcagcaggtcagatcccagcagaaaagtgaagtgagtcgagtcaaagagcttcaggagaagctggagcaggagatcactgagctgaagaggaaagacgctgagctgaagaagctctcacacacagaggatctcaaccagtttctacacaactacccctcactgtcaccactcagccaatcagcatccagcatccatatccatcctctgagctgctttgaggacgtgacagcggccgtgtcagaagtcagagataaactacaggacgttctgagagagaagtggacaaacgtctcactgacagggactgaagtgGACATTATACCGATAGAACCTGATcccaagaccagagctggattcttaaaatattcacgtgaaatcacactggatccaaacacagcacacacacatctggtattatctgaggggaacaggaaagcaacatACATGTGGGAACAAGAGTCTTATTCTcgtcacccagacagattcactgGTTGGTATCTgcaggtcctgagtagagagagtctgactggacgttgtttctgggaggtggagaagagaggaggagttcatgtagcagtcgcatacaagaatatcagcagagcagggaGGTCGCATGAATGTGGATTTGGATTCAATGACAAATCTTGGGCGTTATATTGTTACAACAACGGTTATACATCTTGGTACAACAATGTCCAAACTCCTGTCTCAGGTcctgagtcctccagagtaggagtgtacctggatcacagtgcaggtattctgtccttctacagcgtctctgaaaccatgactctcctccacagagtccagaccacattaaCTCAGCCGCTCTATGCTGGACTTCAGGTTTATGGTTGTTATGGAgactctgctgagttgtgtaaactgaaatagacagaagtcatgtaagggttaaattctgtgttttaactcttcgacttatttagtctccatgtttgttgctgAGAGCTGATTGATGTGACAttctattttttaatatttttttggtCCTTTTCcgccttttatttattttgataggacagctaggtgagagag

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106245 lncRNA upstream 7171 38170054 ~ 38250032 (+) False G79351
TU106252 lncRNA upstream 21212 38187616 ~ 38235991 (+) True G79355
TU106256 lncRNA upstream 31731 38224568 ~ 38225472 (+) True G79359
TU106148 lncRNA upstream 35454 38132277 ~ 38221749 (+) False G79285
TU106240 lncRNA upstream 67964 38150814 ~ 38189239 (+) True G79349
TU106270 lncRNA downstream 5700 38264735 ~ 38265277 (+) True G79367
TU106271 lncRNA downstream 5700 38264735 ~ 38265277 (+) False G79367
XR_005639905.1 lncRNA downstream 108084 38367119 ~ 38367849 (+) True LOC120563039
TU106294 lncRNA downstream 114792 38373827 ~ 38376408 (+) True G79384
TU106295 lncRNA downstream 114792 38373827 ~ 38379212 (+) False G79384
XM_039806189.1 mRNA upstream 68440 38182235 ~ 38188763 (+) False LOC120562476
XM_039806188.1 mRNA upstream 111399 38056416 ~ 38145804 (+) True nek11
XM_039804778.1 mRNA upstream 369197 37878916 ~ 37888006 (+) True cmtm7
XM_039804901.1 mRNA upstream 411489 37826889 ~ 37845714 (+) True LOC120561705
XM_039804902.1 mRNA upstream 411489 37826982 ~ 37845714 (+) False LOC120561705
XM_039806192.1 mRNA downstream 9242 38268277 ~ 38270068 (+) True LOC120562479
XM_039807011.1 mRNA downstream 28702 38287737 ~ 38291323 (+) True LOC120563007
XM_039806193.1 mRNA downstream 42419 38301454 ~ 38305892 (+) True LOC120562481
XM_039807031.1 mRNA downstream 144117 38403152 ~ 38428485 (+) True si:dkey-7j14.6
XM_039806195.1 mRNA downstream 174939 38433974 ~ 38455559 (+) True cmtm6
TU106224 other upstream 111425 38087976 ~ 38145778 (+) False nek11
TU106210 other upstream 179554 38056416 ~ 38077649 (+) False nek11
TU106195 other upstream 373253 37878964 ~ 37883950 (+) False cmtm7
TU105717 other upstream 724134 37530690 ~ 37533069 (+) False G79007
TU106280 other downstream 42390 38301425 ~ 38303688 (+) False LOC120562481
TU106301 other downstream 174958 38433993 ~ 38444670 (+) False cmtm6
TU106613 other downstream 407237 38666272 ~ 38667524 (+) False G79605
TU106631 other downstream 432611 38691646 ~ 38711009 (+) True G79615
TU106594 other downstream 1043004 39302039 ~ 39304070 (+) True dcst2

Expression Profile