RNA id: XM_039807008.1


Basic Information

Item Value
RNA id XM_039807008.1
length 2415
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC120563005
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38472146 ~ 38474560 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACTTCTCAGGAAGTGAGACAGACAGTCGTTGTCACTGagcgagaggtgaaatggcgcagaaaAGAATTAAGCTGGACCGGGAAACCTTCTCTTGtcccatctgtctggatctactgaaggatccggtgactactccctgtggacacaactgctgcatgaactgtattaaaagccactggGATGTTGAGGATCATAAGGACAGCTACAGCTGCCCTGAGTGCAGGAAGACGTTCACACCGAGGCCTAtcctgctgaaaaacaccatgttagcagatttagtgggggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcaccgGGAGAAAACTGAAAGCACACAAGTTCTGTCATCAATGTCTGGCTTCTTACTGTGAGCAACACCTTCAGCCTCATTATGAATCAGAGACATTCAAGAAACACAAGAtggtggagccgtccaagaagctccaggagaacgtctgctctcatcatgatgaggtgatgaagatgttctgccgtactcatcagcagcttatctgttatctctgctctgtggatgaacataaaggccacgacaTAGTCTCAGTTGCAGCAGAAAAgactgagaggcagaaaaagcTCAAGGGGAGTCGATtaaacatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacagcaggcggAGGCCATCCATCGCGCTGCTTATAAAGCAGTGAAGGACAGCGAGAAGATCTTCACtgagctgatccgtctcctggagaaaagaagctctgatgtgaagcagcaggtcagatcccagcagaaaagtgaagtgagtcgagtcaaagagcttcaggagaagctggagcaggagatcactgagctgaagaggaaagattctgagctgaagaagctctcacacatagaggatcacaaccagtttctacacaactacccctcactgttaccactcagccaatcaacatccagcatccatatccgtcctctgagctgctttgaggacttgacagcggccgtgtcagaagtccgagataaactacaggacgttctgagagagaagtggacaaacgtctcactgacagggactgaagtggacgttttactgccacaaccagagcccaagaccagagctggattcttaaaatattcacgtgaaatcacactggatccaaacacagtaTACACACATCTGGTATTATCTAaggggaacaggaaagcaacatTAATGAGACAACAACAGtcttattctagtcacccagacagattcactaACAAgtctcaggtcctgagtagagagagtctgactggacgttggTACTGGGAggtgaagaggagaggagaagtttctgtagcagtcgcatacaagaatatcagcagagcaggtGGGAAGGATGAATGTGGATTTGGACGaaatgacaaatcttgggcGTTAGATTGTATTGataacaaatatacattttcttACAACAATGTCGAAACTCAAGTCTCAGGTCCtctgtcctccagagtaggagtgtacctggatctcagtgcaggtattctgtccttctacagcatctctgaaaccatgactctcctccacagagtccagaccacattcactcagtcGCTCCATGCTGGACTAAGGGTTGGTTGGTCTTCTGGAGAgtctgctgagttgtgtaaagTGAAATAGTCAGAAGTAATTTAAGGGTTaaattttaacttttaaattcTAAGTTTTAACTCTTTGACTTATTTAGTTTCCATGTTTGTTGCTGAGAGCTGATTGGTGTGACATTCTATTTTGTCGACgtttttttgtcagtgtttttgacgtttgtttgcttttatcagcgtttttgtaaatttgtttgaCTTTATTTTGCTTGTATTGACGTTTTATAAGTGATTAGATGTTTTTGGTTTGTTGACAAAACATTCGGGGAGCCCTAGAATCTCTCAATGTGCTCAGTTGAGATCTGTTATTTTACCTTTGATTGTTGAAACACGAAAATATGTTACAAAAGATCTATACCGAGATGATCTGTAGATATTAGCTGTTGTTTGTTAATCATGTATTTCTCCACGTTCTGTATCTGCGGGACAGGAAGATGTCTGTTAAATAgcggtgtcttgtaatcccatgtgggatgggccaaatgtttggcgtgacacagaaatcaaatcaaactgaaagtgtatttagtttctcttccactgcatggctctgaagagagaaagcacCAGACCTCCTTTATCCTACACACTTTGTGAACTGATATGAGAGTATAACTGAGGCGTCTCTGTCCTTTCACCTTTCCTCACTAAAACTGCTCCGTCACAgagaaattcaattcaatttcaattcagttttatttatagtatcaa

Function

GO:

id name namespace
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106538 lncRNA downstream 12146 38458320 ~ 38460000 (-) True G79540
TU106532 lncRNA downstream 16393 38409844 ~ 38455753 (-) True G79534
TU106535 lncRNA downstream 18302 38453116 ~ 38453844 (-) True G79537
TU106542 lncRNA downstream 54224 38404427 ~ 38417922 (-) True G79544
TU106543 lncRNA downstream 55568 38404861 ~ 38416578 (-) True G79545
TU106560 lncRNA upstream 26854 38501414 ~ 38515045 (-) False LOC120563027
XR_005639893.1 lncRNA upstream 26867 38501427 ~ 38515075 (-) True LOC120563027
TU106562 lncRNA upstream 42567 38517127 ~ 38517658 (-) False LOC120562485
TU106563 lncRNA upstream 53885 38528445 ~ 38555962 (-) True G79563
TU106567 lncRNA upstream 78126 38552686 ~ 38553785 (-) True G79567
XM_039807021.1 mRNA downstream 84962 38375662 ~ 38387184 (-) True LOC120563012
XM_039807007.1 mRNA downstream 125445 38344078 ~ 38346701 (-) True LOC120563004
XM_039807005.1 mRNA downstream 134431 38335484 ~ 38337715 (-) True LOC120563000
XM_039807009.1 mRNA downstream 144393 38325282 ~ 38327753 (-) True LOC120563006
XM_039806194.1 mRNA downstream 147862 38318944 ~ 38324284 (-) True LOC120562482
XM_039806197.1 mRNA upstream 7595 38482155 ~ 38484865 (-) True LOC120562484
XM_039807027.1 mRNA upstream 15414 38489974 ~ 38499657 (-) True LOC120563017
XM_039807028.1 mRNA upstream 17981 38492541 ~ 38499657 (-) False LOC120563017
XM_039806198.1 mRNA upstream 42041 38516601 ~ 38522389 (-) True LOC120562485
XM_039807041.1 mRNA upstream 191707 38666267 ~ 38680480 (-) True nudt17
TU106520 other downstream 147936 38321011 ~ 38324210 (-) False LOC120562482
TU106471 other downstream 266964 38140469 ~ 38205182 (-) False LOC120562477
TU106470 other downstream 266964 38201251 ~ 38205182 (-) True LOC120562477
TU106430 other downstream 281345 38080883 ~ 38190801 (-) False G79484
TU106409 other downstream 500798 37970487 ~ 37971348 (-) False LOC120562474
TU106776 other upstream 197442 38672002 ~ 38680464 (-) False nudt17
TU106828 other upstream 432220 38906780 ~ 38908021 (-) False G79767
TU106829 other upstream 432220 38906780 ~ 38908021 (-) True G79767
TU106912 other upstream 623212 39097772 ~ 39138382 (-) True G79820
TU106997 other upstream 921701 39396261 ~ 39456639 (-) False G79872

Expression Profile