RNA id: XM_039807012.1


Basic Information

Item Value
RNA id XM_039807012.1
length 1762
RNA type mRNA
GC content 0.57
exon number 2
gene id LOC120563008
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39425328 ~ 39427120 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aactccccaaatcccagaaaaaggtgattttttcataatatgggctcGGACCCAACATGTCAGGGACTGTGGAAGCTCGGACCCAACATGTCAGGGTCTGTGGGAGGCTGGGACCCAACATGTCAGGGTCTGTGGGAGGCTGGGACCCAACATATCAGGGTCTGTGGAGGCTGGGACCCAACATATCAGGGTCTGTGGAGGCTGGGACCCAACATATCAGGGTCTGTGGAGGCTGGGACCCAACATATCAGGGTCTGTGGAGGCTGGGACCCAACATGTCAGGGTCTGTGGAGGCTGGGACCCAACATGTCAGGGTCTGTGGAGGCTGGGACCCAACATGTCAGGGTCTGTGGAGGCTGGGACCCAACATGTCAGGGTCTGTGGAGGCTGGGACCCAACATATCAGGGTCTGTGCAGGCTGGGACCCAACATGTCAGGGTCTGTGGAGGCTGGGACCCAACATGTCAGGGTCTGTGGAGGCTGGGACCCAACATATCAGGGTCTGTGGAGGCTGGGACCCAACATGTCAGGGTCTGTGGAGGCTGGGACCCAACATGTCAGGGTCTGTGGAGGCTTGGACCCAACATGTCAGGGTCTGTGGAGGCTGGGACCCAACATGTCAGGGTCTGTGGAGGCTGGGACCCAACATATCAGGGTCTGTGGAGGCTGGGACCCAACATGTCAGGGTCTGTGGGAGGCCTGGACCCAACATGTCAGGTTCTGTGGAGGCTCGGACCCAACATGTCAGGTTCTGTGGAGGCTGGGACCCAACATGTCAGGGTCTGTGGGAGGCCTGGACCCAACATGTCAGGGTCTGTGGAGGCTCGGACCCAACATGTCAGGGTGTGTGTAGGCTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCAGGGTCTGTGCAGGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCATGGTCTGTGCAGGGTGGGATCCAACATGTCAGGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCATGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCATGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCATGGTGGGACCCAACATGTCATGGTGGGACCCAACATGTCATGGTGGGACCCAACATGTCATGGTGGGACCCAACATGTCATGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCATGGTGGGACCCAACATGTCATGGTGGGACCCAACATGTCAAGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCATGGTGGGACCCAACATGTCAGGGTGGGACCCAACATGTCAAGGTGGGACCCAACATGTCATGGTGGGACCCAACATGTCATGGTGGGACCCAACATGTCAAGGTGGGACCCAACATGCCAGGGTGGGACCCAACATGTCAAGGTGGGACCCAACATGTCAAGGTGGGACCCAACATGCAGCAGGAAGGGTCTGAAGgtttatttaaaggtgccctgccacacaaaaccgtttctCCTTGTATATTTTGAGATATGTCAGCtccatatgtgtgtttgtgttatgtggtgaatgtgtaaataaactgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106577 lncRNA upstream 430 39382036 ~ 39424898 (+) False G79573
TU106578 lncRNA upstream 430 39384945 ~ 39424898 (+) False G79573
TU106576 lncRNA upstream 430 39417885 ~ 39424898 (+) True G79573
TU106760 lncRNA upstream 26041 39398655 ~ 39399287 (+) True G79714
XR_005639894.1 lncRNA upstream 37121 39385546 ~ 39388207 (+) True LOC120563028
TU106764 lncRNA downstream 5193 39432313 ~ 39433121 (+) True G79717
TU106758 lncRNA downstream 7330 39434450 ~ 39454292 (+) False G79713
XR_005639897.1 lncRNA downstream 48655 39475775 ~ 39479389 (+) True LOC120563031
XR_005639895.1 lncRNA downstream 57831 39484951 ~ 39485980 (+) True LOC120563029
XR_005639896.1 lncRNA downstream 72226 39499346 ~ 39501137 (+) True LOC120563030
XM_039807020.1 mRNA upstream 5655 39391948 ~ 39419673 (+) True LOC120563011
XM_039807026.1 mRNA upstream 78896 39312639 ~ 39346432 (+) True LOC120563015
XM_039807030.1 mRNA upstream 93812 39321630 ~ 39331516 (+) True LOC120563019
XM_039806202.1 mRNA upstream 119241 39302167 ~ 39306087 (+) False dcst2
XM_039806201.1 mRNA upstream 146825 39265833 ~ 39278503 (+) True LOC120562489
XM_039806080.1 mRNA downstream 338053 39765173 ~ 39771420 (+) True LOC120562364
XM_039806203.1 mRNA downstream 354116 39781236 ~ 39803887 (+) True LOC120562494
XM_039806074.1 mRNA downstream 384735 39811855 ~ 39828704 (+) True LOC120562359
XM_039806205.1 mRNA downstream 497205 39924325 ~ 39979365 (+) True LOC120562496
XM_039806075.1 mRNA downstream 655910 40083030 ~ 40093260 (+) True LOC120562361
TU106586 other upstream 104003 39313989 ~ 39321325 (+) False LOC120563015
TU106594 other upstream 121258 39302039 ~ 39304070 (+) True dcst2
TU106631 other upstream 714319 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 757804 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 980658 38433993 ~ 38444670 (+) False cmtm6
TU106757 other downstream 6341 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 6341 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 33328 39460448 ~ 39463841 (+) True G79722
TU107036 other downstream 340807 39767927 ~ 39768850 (+) False LOC120562364
TU107204 other downstream 889619 40316739 ~ 40321067 (+) True G80003

Expression Profile