RNA id: XM_039807021.1


Basic Information

Item Value
RNA id XM_039807021.1
length 1857
RNA type mRNA
GC content 0.56
exon number 7
gene id LOC120563012
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38375662 ~ 38387184 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCTCGGGTCCAGAATCGTCCGTGTGCGTGTTTAAGCTGCAGGACATCAGAGCGGTGTTCGCTGGGACCTACATGAACTTCGACTTCCAGAACCAGCAGTGGAGTACAGTGCTGGGAAAACACCCCTACCTGGGACAGTGTGGACTGGACAAAGCTTCAGATTCTGAATTAGAGCAGGTGAAGAAGAGTTTCATGACCAGCGGCAAGGTGAAACCGGTCGGAGGCGGTCCCGTCGTGGTTTCTTCAGGGCAGCAGTACAGTCACGTAGCAGCGCTGAGGACGCAGGCAGCCAATGGAAACCCGTATACTGTCCTTTTCCTTCTTACAGAGTCTGGATTCCTCCACAAAGTGGTTTTGTTGGCTCGGGGTGCGCATGTTGTTGAGGAGATTCAGGTTTTCTCTCAGCCTCAGCTGGTGAAAAGCATcgtcctctcctcctcaaagGGAGTTGTCTACGTGGGGACATCGGAGGGCGTGACGGCGGTCCCGGTGGCCCGGTGCTCGGGCTACAGGACCTGCAGCCAGTGTGTTCTGGCCAGAGATCCGCTGTGTGGATGGAGCCGCTCCGCTGGCGTCTGCACCGCCCTGGACGCCCAGCAACACGACATGGCTCAAGACCTGGAGGACGGTAATGTTGAAAAACAATGTCCGGGACAAACCAGGAACAGTCTGCTCCCAGCCACAGAAGTCCGCGTTCGTCTGAACGAAGCGGTGAGGCTTCAGTGTCGGAAACCTTCCAACATGGCCGCTCTGACCTGGACTTCCTCTCGATCCGACAGCATGCCGGACAAACTCTTCATCCGCTCAGCTGACGGAAGTCTGAGCTTCCTCGCCGCTGCCGAAACCTTCGGGACGTATCGCTGCGAGGCGGAGGAAGGCGGGTACAGGGAAACAGTCGCCAGCTACGAGGTCCAGGACATCGCTCCTCCGCAGATCGCCTCGCCGCGCTCCTTCAGCCCCTTTCCCAAAGACGACCACGAGACCGACAGTGAAGACGAACCCTTGGAAGAAATTTTCTTTCCCACTGAGGAACCGAAGACTTCTACCACGAAACCTTCAGGAGAACCGGAGGACTCCGGGATGAAAGACAAAGGTGTGCCGGGGACGACCGATTGGAGCGATGTATACCCGACCGATTTAAGAGACGAGATCGTCGTCGCCGACAAAGCCGATTCTGGGTTGAAGAACGAGATCAAGGTGACTCCCGAAAGAGACGCCAGGTTGGGGGTGGAGCCGGCTGACGAACGCCTCCGCGTCCGAGAGAAGAGCTTCTACAGCGAGCTGGTGGTCGTTTCCCTCCTGCTGGCGGCCTGCGTCTGCGTCCTGATACTCGCAGGAATCCACGTGTGGCGCCAAAGGAAAACGGGACTCAAAAAGATTTCTCTGGTCGGTTCGGAGGACGGCggcaaaaccaaccaatcgatGGAGACCGTTCCGTCTCTGAGCAGCCCCGAGGACGCCGGGGGGCCCGAGGTGAAGGTGGAGTAACGACTCAACTCATAGTCCTACGCTGGAAGTGCCGATTGACCGAAGTTAACTCGccattaatcgcacattttctTATCTgctctaaatgtactttaaagggATATTGTTCAAGTTTGTATTGCTCTTATTAACAGTGTGggcccatagactgtatatgaatggacagagcatgtgtgacgtcacccattggtttgtggagatctgctatgagtcgtcgagtttgccgttacaggCGCTGCCACCCTGGTTgtggatgtgacgattttagacgagagggaggagagagggaggagctgcttacactctacgttacacactttcactggcaatcacatcatagccacgccctaaaacacccccttcTTTAT

Function

GO:

id name namespace
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639892.1 lncRNA downstream 57024 38318135 ~ 38318638 (-) True LOC120563026
XR_005639891.1 lncRNA downstream 57815 38317403 ~ 38317847 (-) True LOC120563025
TU106505 lncRNA downstream 83363 38287741 ~ 38292299 (-) True G79518
TU106493 lncRNA downstream 120624 38250106 ~ 38255038 (-) True G79510
TU106486 lncRNA downstream 149574 38224206 ~ 38226088 (-) False G79507
TU106542 lncRNA upstream 17243 38404427 ~ 38417922 (-) True G79544
TU106543 lncRNA upstream 17677 38404861 ~ 38416578 (-) True G79545
TU106532 lncRNA upstream 22660 38409844 ~ 38455753 (-) True G79534
TU106535 lncRNA upstream 65932 38453116 ~ 38453844 (-) True G79537
TU106538 lncRNA upstream 71136 38458320 ~ 38460000 (-) True G79540
XM_039807007.1 mRNA downstream 28961 38344078 ~ 38346701 (-) True LOC120563004
XM_039807005.1 mRNA downstream 37947 38335484 ~ 38337715 (-) True LOC120563000
XM_039807009.1 mRNA downstream 47909 38325282 ~ 38327753 (-) True LOC120563006
XM_039806194.1 mRNA downstream 51378 38318944 ~ 38324284 (-) True LOC120562482
XM_039806191.1 mRNA downstream 125111 38229558 ~ 38250551 (-) True dcst1
XM_039807008.1 mRNA upstream 84962 38472146 ~ 38474560 (-) True LOC120563005
XM_039806197.1 mRNA upstream 94971 38482155 ~ 38484865 (-) True LOC120562484
XM_039807027.1 mRNA upstream 102790 38489974 ~ 38499657 (-) True LOC120563017
XM_039807028.1 mRNA upstream 105357 38492541 ~ 38499657 (-) False LOC120563017
XM_039806198.1 mRNA upstream 129417 38516601 ~ 38522389 (-) True LOC120562485
TU106520 other downstream 51452 38321011 ~ 38324210 (-) False LOC120562482
TU106471 other downstream 170480 38140469 ~ 38205182 (-) False LOC120562477
TU106470 other downstream 170480 38201251 ~ 38205182 (-) True LOC120562477
TU106430 other downstream 184861 38080883 ~ 38190801 (-) False G79484
TU106409 other downstream 404314 37970487 ~ 37971348 (-) False LOC120562474
TU106776 other upstream 284818 38672002 ~ 38680464 (-) False nudt17
TU106828 other upstream 519596 38906780 ~ 38908021 (-) False G79767
TU106829 other upstream 519596 38906780 ~ 38908021 (-) True G79767
TU106912 other upstream 710588 39097772 ~ 39138382 (-) True G79820
TU106997 other upstream 1009077 39396261 ~ 39456639 (-) False G79872

Expression Profile