RNA id: XM_039807023.1


Basic Information

Item Value
RNA id XM_039807023.1
length 1880
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC120563013
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38211820 ~ 38230481 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctgtctgtctgtctgtcagagggagaagaagcgAGTCTTGTTTCTCTACAACCTGCTGATCCAGCGACAGATTTCCTCCCTTGACAGTGAAGGCACCACCAGCAGAGGCCAGCGGAGCAGGACTGTGAGTGGAGTCCTACGGAGGCTGATTTCCCCCAGTGACATTGAAGGCACCACCAGCGGAGGCCAGTGGAGCAGGACGGTGAGTGGAGTCCTACGGAGGCTGATTTCCCCCAGTGACATTGAAGGCACCACCAGCGGAGGCCAGTGGAGCAGGACGGTGTTTCAGCGTCTACGGCGCTACGGACGCCGTCTTTATCGCCATCTCCAGCAGGAAGTGTCGGACTCACAGCTTCACTCTGAGACAGAATGGCTTCCAGATCAGAGGAGGATCTCTGCTGTCCGGTCTGTAGTGACGTCTTCAGAGATCCTGTCGTTCTGACGtgtagccacagcttctgtaaagACTGTCTGCAGAGCTGGTGGACAGAGAAACCAACACAGGAGTGTCCAGTGTGTAACAGAAGATCTTCAAGGGATGAACCACCTTTAAACCGGGCGTTAAAGAACCTGTGTGAGGCCTTCATACAGGAGAGAGATCAGAGATCTTCAGAGACTCTCTGCTgtctgcactctgagaaactcaaactcttctgtctggaccatGAGTGGCCGGTGTGTGTCGTCTGCAGAgattcagaaacacacaccaaccacaGATTCAAACCCATCGATGAAGCTGCACGACAACACAGGGAGGAACTTCAGGAAACTCTGCAGCCTGTAAAGAAGAAGTTAAAAGTTTTTGAACAAGTAAAAGAGGAGTGTGATAAAACAGCACAAATTATAAAAGTCCAGGCCCGACGCACAGAGATGCAGATTAGGGATCAGTTTAAGAAGCTTCACCAGTttctagaagaggaagagaaggccaggatggctgcactgagggaggaagaggagcagaagagttGGAGGATGAAGCAGAAGATGGAAgctctgagcagagagatagcagctctttcagacacagtcagagccacagaggagcagctgagagctgaagacgtCTCATTCCTGATCTACTACAGGGCTGCAGAGGAAAGCGTCctgcagcgccccctgctggatgatccacagctgctcccaggagctctgatagatgaggccaaacacctgggcaacctgagcttcaacatctggaacaagatgaaggacatgGTCTCCTACAGTCCTGTGATcctggacccaaacactgctcACCCAAAACTCATCCTGTCTGGAGATATGACCAGTGTGAGACGAGTAGGAGAGACACAGCTGCTCCCTGataatccagagaggtttgatgaTTACTGCTCTgtcctgggctctgagggcttaaactcagggactcacagctgggatgTCTGGGTTGGAGACAGTGCAGACTGGGAACTGGGAGTGTTAGCAGAGTCCTTCCAAAGGAAGAGATTCATAGGGTCGGGATTATGGAGCATAATGTTCTCTCAAGGTAAATGCTCAGCGTGGTCATGGCTAGCGCGACCCACTGTTCTCAGAGTGCACGTGAAGCCCCAGAGGATcagagtgactctggactgtaacagaggaaagctgtcgttctctgatcctgatactaacacacacatacacaccttcaaacacactttcactgatAGACTGTTTCCATACATTTACACTGGGAAAGAACTCCCACTGGAGATATCACCACAGAAGGTCTGTGTGACAGTGGAACACAGCAGTTAAAGATTTagggtcctatcttgcacccagcgcgaAGCCCGAAGCccgacccaagtgtctttgctagtttaagaccaacgcagttgtcaggttcccgtccagcgcccacgttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106434 lncRNA downstream 21019 38182499 ~ 38190801 (-) False G79484
TU106429 lncRNA downstream 21019 38187616 ~ 38190801 (-) False G79484
TU106432 lncRNA downstream 28821 38126925 ~ 38182999 (-) False G79484
TU106458 lncRNA downstream 62480 38148610 ~ 38149340 (-) False G79495
TU106459 lncRNA downstream 62480 38148610 ~ 38149340 (-) True G79495
TU106493 lncRNA upstream 19625 38250106 ~ 38255038 (-) True G79510
TU106505 lncRNA upstream 57260 38287741 ~ 38292299 (-) True G79518
XR_005639891.1 lncRNA upstream 86922 38317403 ~ 38317847 (-) True LOC120563025
XR_005639892.1 lncRNA upstream 87654 38318135 ~ 38318638 (-) True LOC120563026
TU106542 lncRNA upstream 173946 38404427 ~ 38417922 (-) True G79544
XM_039806190.1 mRNA downstream 7092 38201545 ~ 38204728 (-) False LOC120562477
XM_039806186.1 mRNA downstream 240621 37958449 ~ 37971199 (-) True LOC120562474
XM_039806185.1 mRNA downstream 356998 37851161 ~ 37854822 (-) True si:dkey-11p23.7
XM_039806184.1 mRNA downstream 415054 37744084 ~ 37796766 (-) True LOC120562472
XM_039806379.1 mRNA downstream 481754 37725589 ~ 37730066 (-) True mrps12
XM_039806194.1 mRNA upstream 88463 38318944 ~ 38324284 (-) True LOC120562482
XM_039807009.1 mRNA upstream 94801 38325282 ~ 38327753 (-) True LOC120563006
XM_039807005.1 mRNA upstream 105003 38335484 ~ 38337715 (-) True LOC120563000
XM_039807007.1 mRNA upstream 113597 38344078 ~ 38346701 (-) True LOC120563004
XM_039807021.1 mRNA upstream 145181 38375662 ~ 38387184 (-) True LOC120563012
TU106471 other downstream 6638 38140469 ~ 38205182 (-) False LOC120562477
TU106470 other downstream 6638 38201251 ~ 38205182 (-) True LOC120562477
TU106430 other downstream 21019 38080883 ~ 38190801 (-) False G79484
TU106409 other downstream 240472 37970487 ~ 37971348 (-) False LOC120562474
TU106375 other downstream 418040 37783831 ~ 37793780 (-) False LOC120562472
TU106520 other upstream 90530 38321011 ~ 38324210 (-) False LOC120562482
TU106776 other upstream 441521 38672002 ~ 38680464 (-) False nudt17
TU106828 other upstream 676299 38906780 ~ 38908021 (-) False G79767
TU106829 other upstream 676299 38906780 ~ 38908021 (-) True G79767
TU106912 other upstream 867291 39097772 ~ 39138382 (-) True G79820

Expression Profile