RNA id: XM_039807025.1


Basic Information

Item Value
RNA id XM_039807025.1
length 1358
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC120563014
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38581518 ~ 38592495 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAATGCTCCGTCTCAGTTCTAGTCAGTCAGTGTCTTTCTCATCACTGCTGCAGGTTCAACattcaaacaataaaaaaattaaatcaactCATTAAAAAAGAAAGGATGGCAGTTTGGGACAGAAAGATTTCCTGTTGCTTCATGTTACTGCTCGCTGGAGCTCTGGGTCAACGTGTGAACAATCCACGTCGTGTTTGTGGTGTGGTAGGATCGACCGTCACCCTCCGCTGCTCCTTCAACACACGGAAATCTGTTGTTGATGATGTAGGAGAACCTTTGATCAGAGTCATCTGGTGCAAGGGCCCTAACGCTTGTGGGAGAGACGCTCCGTCTGTGTACGACAGCGAATCACAGAACAACGACCCTCGTTACAGATACCTGGGAGACAAGAAGGGAGACTGCACTTTACAGATCTCAGATCTACAGGAGGAAGACGAcacaacttttcgcttcagagTGGAAACTAATTATGTCAGAGTAACTTTAACTGCCCCAGTAAGAGTGAGAGTCAGAGTCGTGGATGGTGCTCAGCTGAGGATAAGAAGCTCCAGAGATGATGGAGAGTttaaaagaggagaagaagtcACACTGAGCTGTTCTGCTGCAAACTGCACTATCCACCAACTGGAGGTCACCTGGTTCAGAGAAGGCTCTGCCCTCTCAGAGACTGGACCTGCCCTCCATCTCAGTTATCTGACCGCAAAGGATTCTGGGAACTACACCTGTGGTTTGAGGAAGAATGAGCGCACTCTCTCCGTCCCGTACAGCCTGCATGTGGAGGATGACGAGGCAGAAAAGGCAGAACAGgaagATGCTCTGGGTCTAAGTGTGAACTATCCAGGTCCTGTTTGTGGTGTGAAAGGATCGACCGTCACCCTCCCCTGCTCCTTCACACCGCTGGAGTCTGTAACGGACGACAATGGAAGAGAAGTTTTGATCGAGGTCGTCAGAGTCGTCTGGTGCAAGAACCCTTTACTGTGTCAGACAGGCACTCCGTCCGTGTACGACAGCGAATCAAACAACGACCCTCGTTACAGATACCTGGGAGACAAGAAGGGAGACTGCACTTTACAGATCTCAGATTTACAGGAGGAAGACGACGCAACTTTTTGCTTCAAAGTGGAAACTAATGATCCCAGAGCAACTTTTACTGGCCAACCAGGAGTGAGAGTTACAGTCGGAGGAACTAAATCATCTGacccactgctggctgttcgtCTGCTTATCTTCACACTGCACACTGTTCTTATCGTCATAGTAACGTCCATCATCATCAAAAGGACGTGCGTTCGCAAGAAAGCAGACGTGACTGTGCAGCTCTTTGAaaagtagggatgcactgaatacAGATTTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106568 lncRNA upstream 25233 38556066 ~ 38556285 (+) True G79568
TU106281 lncRNA upstream 59701 38456643 ~ 38521817 (+) True G79373
TU106304 lncRNA upstream 127692 38453146 ~ 38453826 (+) True G79392
TU106276 lncRNA upstream 169111 38405477 ~ 38412407 (+) True G79370
TU106275 lncRNA upstream 170422 38405477 ~ 38411096 (+) False G79370
XR_005639903.1 lncRNA downstream 20363 38611259 ~ 38611869 (+) True LOC120563037
TU106607 lncRNA downstream 51652 38642548 ~ 38647914 (+) True LOC120563036
XR_005639902.1 lncRNA downstream 51671 38642567 ~ 38644006 (+) False LOC120563036
TU106615 lncRNA downstream 75376 38666272 ~ 38673012 (+) True G79605
TU106614 lncRNA downstream 81115 38672011 ~ 38673012 (+) False G79605
XM_039806199.1 mRNA upstream 5950 38525204 ~ 38575568 (+) True tg
XM_039806195.1 mRNA upstream 125959 38433974 ~ 38455559 (+) True cmtm6
XM_039807031.1 mRNA upstream 153033 38403152 ~ 38428485 (+) True si:dkey-7j14.6
XM_039806193.1 mRNA upstream 275626 38301454 ~ 38305892 (+) True LOC120562481
XM_039807011.1 mRNA upstream 290195 38287737 ~ 38291323 (+) True LOC120563007
XM_039807004.1 mRNA downstream 3149 38594045 ~ 39098913 (+) True LOC120562999
XM_039807015.1 mRNA downstream 94883 38685779 ~ 38780360 (+) False cpne4a
XM_039807017.1 mRNA downstream 94883 38685779 ~ 38780360 (+) False cpne4a
XM_039807016.1 mRNA downstream 106636 38697532 ~ 38780360 (+) True cpne4a
XM_039807018.1 mRNA downstream 293394 38884290 ~ 38903260 (+) True plin6
TU106301 other upstream 136848 38433993 ~ 38444670 (+) False cmtm6
TU106244 other upstream 260911 38170054 ~ 38320607 (+) True G79351
TU106246 other upstream 261089 38170054 ~ 38320429 (+) False G79351
TU106280 other upstream 277830 38301425 ~ 38303688 (+) False LOC120562481
TU106224 other upstream 435740 38087976 ~ 38145778 (+) False nek11
TU106613 other downstream 75376 38666272 ~ 38667524 (+) False G79605
TU106631 other downstream 100750 38691646 ~ 38711009 (+) True G79615
TU106594 other downstream 711143 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 723093 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 842565 39433461 ~ 39454292 (+) True G79713

Expression Profile