RNA id: XM_039807033.1


Basic Information

Item Value
RNA id XM_039807033.1
length 1004
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC120563021
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38995153 ~ 39009576 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGATGAATAATCCTGCATCACTACCTggactctctcacacacacacacacagGTTTGAAGTTGTGTCCTCATCATGTCAGACGGCAGCAGAATCTTAAACGTTGCGAAGACCTTTATTGAGTCCTGCAGCGATGTTGCTCCGCAGCAGAGGATGAAGCTCTACGACCAATGGGCCGAGACGTACGAACAGGATCACAGCCTGATCGGCTACAGAGCACCACATCAGACGGTAGACTTCTTGAACGCCAACTTCTCGGGGAGTCGTGAGCAGGTTCTGGTTCTGGATGTGGCCTGTGGGTCTGGATGGGTCGCTAAACTGATGGCTGAACTGGGCTTCAGGAACTTTGTGGGAGTGGACGGCAGTAAAGGGATGCTGGAACAAGCTGCAAAGACCGGCCTCTATCAGGACCTCAGACTGGCCTTACTGGGAACAGAACCACTGCCGGCACAGACTGATGGGTTTGACGTGGTGATGATCGTCGGTGCTTTGCGTCATGGTTTTGTTCCAGTCAGCGTTGTGAGGGAGCTCTGCTACGCTGCCAAACCAGGAGGCTACGTTTGCATGTCGAGAGTGGACCCAAAGTTGGAGTCTGGAGACAAATACAAGGTGTGTTTGGAGAAAGAGCTGCAGCTGATGGAGGACGAGGGACTGTGGACCCGTGTGATCAGCCAAGAGATGGACAGATACGTGATTGATGTTAATAATTATCTCAAAGACCAGCACGATGACAAGTACCTCTATGGGACCATGTACCTGTACAGGAAGGCCCTCAATTAGTCTGAATGCATTCATAAAGTGTCCCATCTTTTGATCAGAGTGTGGAAGGTGGAACTAATTCACACTTTTATTTTGCTAAATTCATGAATTCAGAATCAATTTTaaacattgtattttgcatCTGAATTTGAGTAAATTCAAGGCAAAAAAattcagatacacacacacacacacacaggcgcacacacacagacatgcacacagacgcgcacacacacagacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106662 lncRNA upstream 107956 38886728 ~ 38887198 (+) True G79639
TU106652 lncRNA upstream 117152 38874927 ~ 38878002 (+) True G79635
TU106645 lncRNA upstream 142046 38852594 ~ 38853108 (+) True G79628
TU106642 lncRNA upstream 188670 38804573 ~ 38806484 (+) True G79625
TU106639 lncRNA upstream 197997 38796618 ~ 38797157 (+) True G79623
TU106695 lncRNA downstream 11363 39020939 ~ 39022181 (+) True G79660
TU106602 lncRNA downstream 85314 39094890 ~ 39098612 (+) False LOC120562999
XR_005639901.1 lncRNA downstream 110734 39120310 ~ 39121952 (+) True LOC120563035
TU106716 lncRNA downstream 126910 39136486 ~ 39136756 (+) True G79679
TU106722 lncRNA downstream 181858 39191434 ~ 39193622 (+) True G79685
XM_039807018.1 mRNA upstream 91894 38884290 ~ 38903260 (+) True plin6
XM_039807015.1 mRNA upstream 214794 38685779 ~ 38780360 (+) False cpne4a
XM_039807017.1 mRNA upstream 214794 38685779 ~ 38780360 (+) False cpne4a
XM_039807016.1 mRNA upstream 214794 38697532 ~ 38780360 (+) True cpne4a
XM_039807024.1 mRNA upstream 402659 38581518 ~ 38592495 (+) True LOC120563014
XM_039807035.1 mRNA downstream 11234 39020810 ~ 39030834 (+) False LOC120563022
XM_039807036.1 mRNA downstream 11237 39020813 ~ 39030834 (+) True LOC120563022
XM_039807037.1 mRNA downstream 11237 39020813 ~ 39030834 (+) False LOC120563022
XM_039807038.1 mRNA downstream 11244 39020820 ~ 39030834 (+) False LOC120563022
XM_039807039.1 mRNA downstream 14858 39024434 ~ 39030834 (+) False LOC120563022
TU106631 other upstream 284145 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 327630 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 550484 38433993 ~ 38444670 (+) False cmtm6
TU106246 other upstream 674725 38170054 ~ 38320429 (+) False G79351
TU106594 other downstream 292463 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 304413 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 423885 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 423885 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 450872 39460448 ~ 39463841 (+) True G79722

Expression Profile