RNA id: XM_039807038.1


Basic Information

Item Value
RNA id XM_039807038.1
length 904
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC120563022
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39020810 ~ 39030834 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctctcacacacacacacacagCTGCCGAACGGAAAGAGTCCAAAACATATTTCCCTTcggtgacaataaaGTTTGATGTTGTGTCCTCATCATGTCAGACGGCAGCAGAACTGTAAACGATGTGAAGACCTTTCTCAAGTCCTACAGAGACGTTGAGAGGATGAAGTTCTACGACCAATGGGCCGAGACGTACGAACAGGATTGCAACCTGATGGGATACAGAGCGCCACATCAGACGGTAGACTTCCTGAATGCCAACATCTCTGGGAGTCGTGAGCAGGTTCTGGTTCTGGACGTGGCCTGTGGATCTGGATGGGTTGCTAAACTGATGGCTGAACTGGGCTTCAGGAACTTTGTGGGAGTGGACGGCAGTAAAGGGATGCTGGAACAAGCTGCAAAGACCTGCCTCTATCAGGACCTCAGACTGGCCTTACTGGGAACAGAACCACTGCCTGCACAGACTGATGCATTTGACGTGGTGATGATTGTCGGTGCTTTACGTGATAGTTTCGTTCCAGTCAGCGTTGTGAGGGAGCTCTGCTACGCTGCCAAACCAGGAGGCTACGTCTGCATGTCGAGAGTGGACCCAAAGTCGGAGTCTGGAGACAAATACAAGGTGTGTTTGGAGAAAGAGCTGCAGCTGATGGAGGACGAGGGACTGTGGACCCGTGTGATCAGCCAAGAGATGGACAGATACATGATGGATGTTTATTTAGATGACCAATACCTCTATGGGACCATGTACCTTTACAGGAAGTCACTCAATTAGTCTGAATGCATTCATACAATGTCCCATCTTTTGATCATTGTATTTTACATCTGAATTTGGTATATTGAATTTCTTTACGTCAAATTTTTGGTTTTGAATTATTGAACTTAGACAAATAAAGGTGTGAAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106692 lncRNA upstream 11930 39008640 ~ 39008890 (+) True G79657
TU106687 lncRNA upstream 13816 38975402 ~ 39007004 (+) True G79653
TU106662 lncRNA upstream 133622 38886728 ~ 38887198 (+) True G79639
TU106652 lncRNA upstream 142818 38874927 ~ 38878002 (+) True G79635
TU106645 lncRNA upstream 167712 38852594 ~ 38853108 (+) True G79628
TU106602 lncRNA downstream 64056 39094890 ~ 39098612 (+) False LOC120562999
XR_005639901.1 lncRNA downstream 89476 39120310 ~ 39121952 (+) True LOC120563035
TU106716 lncRNA downstream 105652 39136486 ~ 39136756 (+) True G79679
TU106722 lncRNA downstream 160600 39191434 ~ 39193622 (+) True G79685
TU106723 lncRNA downstream 163146 39193980 ~ 39194992 (+) True G79686
XM_039807032.1 mRNA upstream 11244 38995153 ~ 39009576 (+) True LOC120563021
XM_039807033.1 mRNA upstream 11244 38995154 ~ 39009576 (+) False LOC120563021
XM_039807034.1 mRNA upstream 11244 38995171 ~ 39009576 (+) False LOC120563021
XM_039807018.1 mRNA upstream 117560 38884290 ~ 38903260 (+) True plin6
XM_039807015.1 mRNA upstream 240460 38685779 ~ 38780360 (+) False cpne4a
XM_039806201.1 mRNA downstream 234999 39265833 ~ 39278503 (+) True LOC120562489
XM_039806202.1 mRNA downstream 271333 39302167 ~ 39306087 (+) False dcst2
XM_039807026.1 mRNA downstream 281805 39312639 ~ 39346432 (+) True LOC120563015
XM_039807030.1 mRNA downstream 290796 39321630 ~ 39331516 (+) True LOC120563019
XM_039807020.1 mRNA downstream 361114 39391948 ~ 39419673 (+) True LOC120563011
TU106631 other upstream 309811 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 353296 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 576150 38433993 ~ 38444670 (+) False cmtm6
TU106246 other upstream 700391 38170054 ~ 38320429 (+) False G79351
TU106594 other downstream 271205 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 283155 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 402627 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 402627 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 429614 39460448 ~ 39463841 (+) True G79722

Expression Profile