RNA id: XM_039807044.1


Basic Information

Item Value
RNA id XM_039807044.1
length 1082
RNA type mRNA
GC content 0.44
exon number 4
gene id si:dkey-87o1.2
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21595071 ~ 21597057 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTGTGGAGGAAATACGTGGATTGTCACGCCCAACCTGTTGAGCAGGTGGAGCAGGTTACAGGTAGGCCGACGGTAAACACGCAGTCACATCGTGCACGTTTGGAGAGATATGAACAAGTGACTCGGCGGCAACAGCAACTCCACCACTTGGCCCCATTGTGTCTTTTTGTCGTCTCAAACAAGATGAAGCTCGCGATTTGTTTGGCCTTCCTGAGTGTGGCTATAGTGGCTGTAATGATTTTCCAGGCCGTGCGCCAGGAGTTGAACCTGCGTGTTTTGAAAAGCCGCACGGTGGAGAACACGGAGCAGATCAAGAGGAAAGAGGATACCATCATCGAAGTGAAAAGCAAAATCCAGGCGATGAAATCAAAGCTGGTGTTCGTCAACACCAACATAGAtacactgaagaagaagaagacagacGGTGAACAAAAAGCAGAGGAACTCGGTAAAAATCTGCAGACCTGTATCGCAGAGAagGAAGCGGTTGAGAAGAAGAGCTCAGGTATGAGAGAGAGCATGACTACACTCAAAGCTGATCACGAACAGGCTAAAAAGAAGGCTGAAGAGGAAATTCAGAGCTTGAAACAACAGATTTTGGATAGAGACAAAGCTATTTGTGCCTTTGCCGATACGTCCAAGGACGAAGCACGgaGGCTGTGTGGACTCTGAATAAAGTAAACTCAACATTGACTGGGaacattaaagaaaaagaagcatGCCATGCAATTGAGGATAAAATGTGTAATATTGCTGTTGTGAGTACAGCTCTGATGGTTTCTTATGCAAAAGTAACTGTTTTTGTACATTCATTTATTGGACAAATTGCACAGACATAGGGAGTGGGGAAATATGTTTCACAGTTTTGTACCATTTTGTTATGTGATTGTTTTGGTGGGATCTAGTTATGCCCTTTGTCACTGTAAAATACTTGTGATTTCAACGTCCACAAATAAATGAACTTGACTGTCATGCAGATGCAGTGTTAGCCTGATTTAAACCGGTAAAGCTATAACTTTAACACCTGAACCAGCctgcttgtgtttttgttgcccTGCCCTCAATAAAAGTGTATGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99494 lncRNA upstream 259378 21334669 ~ 21335693 (+) False LOC120563169
TU99367 lncRNA upstream 302691 21291042 ~ 21292380 (+) True G74288
TU99366 lncRNA upstream 304757 21289553 ~ 21290314 (+) True G74287
TU99365 lncRNA upstream 305696 21289171 ~ 21289375 (+) True G74286
TU99348 lncRNA upstream 351504 21243229 ~ 21243567 (+) True G74274
XR_005639855.1 lncRNA downstream 127891 21724948 ~ 21725705 (+) True LOC120562851
TU99850 lncRNA downstream 439221 22036278 ~ 22036659 (+) True G74673
TU99814 lncRNA downstream 486625 22083682 ~ 22084524 (+) False slc50a1
TU99858 lncRNA downstream 493563 22090620 ~ 22091916 (+) False slc50a1
TU99933 lncRNA downstream 518559 22115616 ~ 22116026 (+) True G74729
XM_039805792.1 mRNA upstream 25000 21561788 ~ 21570071 (+) False osgin2
XM_039805794.1 mRNA upstream 25000 21561788 ~ 21570071 (+) False osgin2
XM_039805791.1 mRNA upstream 25000 21561970 ~ 21570071 (+) True osgin2
XM_039805793.1 mRNA upstream 25000 21561971 ~ 21570071 (+) False osgin2
XM_039805782.1 mRNA upstream 39053 21493414 ~ 21556018 (+) True adam22
XM_039804688.1 mRNA downstream 1977 21599034 ~ 21603458 (+) False them4
XM_039804689.1 mRNA downstream 1978 21599035 ~ 21603458 (+) False them4
XM_039804690.1 mRNA downstream 1984 21599041 ~ 21603458 (+) False them4
XM_039805032.1 mRNA downstream 11402 21608459 ~ 21627308 (+) True rorc
XM_039805033.1 mRNA downstream 11402 21608459 ~ 21627308 (+) False rorc
TU99513 other upstream 190468 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 583700 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 1945560 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 2436076 19148613 ~ 19158995 (+) False G73570
TU99582 other downstream 1998 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 172491 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 535521 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 540508 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 600737 22197794 ~ 22199818 (+) False kcnn3

Expression Profile