RNA id: XM_039807050.1


Basic Information

Item Value
RNA id XM_039807050.1
length 2064
RNA type mRNA
GC content 0.47
exon number 18
gene id tcea3
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17584023 ~ 17593027 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCGTGCAGGTCAGCTGGGATCCTGCTGCAGGACACGCCTCTGGGCTGAATGGAGCTCGCGCCGTGCGAGAAGTTCGACTTGCAGTGGATCCAAAATTGTTTTGACCAGATTTCACGGATTTTAACAAGGATCTATAATCGATATTATTGAGTCTTTATAGTCGAGTAAATGCAGCGATGACGCGGGAGGAAGATCTCATTCGGATTGCAAAAAAATTGGACAAGATGGTGTCTCGAAATAACACGGAGGGCGCCATGGACCTGCTGAGGGAACTGAAAGGTTTCAATATGACACTCAAACTTCTCCAGGAAACGAGGATCGGCATGTCTGTGAACGGTATCAGGAAGCACTGCACAGACGAGGAAGTCATTGCCTTGGCAAAGATCCTCATTAAAGACTGGAAAAGACTTCTGGactCTGAGAAACCATCTGAAATGAAGAACGGTTTGGATTCCAGTAAAACAGCCGTGTCTCCACACAGCTCCCCCTCTGAGACACAAAGCAGGAAACTTACACTGGACCCAAATGCTCCATTTGCTCCTCTTCCttttcatcttcatcctcctccaccCAGAAAAGAGCCTCCTGACCCCaacgctcctcttcctccacttcCTCTTCACCTGCATCCCCCACCTGCTCAACCGAAGCGTCCCTCACTGGACGGGAAAAAAGAGAGCAAAAAGGAGTCGTCAGACTATAAACCTCTTCCGCAGAAGAAGACGTCAGATCACATGAAGAAAGACAGgAAAGACTCATCGGATGGCAAAGTGCCTAAAAAACACTCCGATGAAGCCAAGAGAGAAAGGAAAGATTCATCTGACTCTAAACCACCACTTCCCAAAAGTCCCAGTTTGGATgtcaaaaaggaaaaacacagGAAGGACTCCTGCGACTCAAAGCCTGGCCAACCTGTTAAACGTCAATCAGCTGATTTCAAACCTGACAGGCGGGAATCCATCGATTCAAAGAAAAGCAGCCCACCCCCAGCAAAGAAGCTCACAGTTGAAAGAAGAGAGTCTCACGGCTCTAAGACTTCTCAGCCTGGACCTCCACAGAGGAAGCCCTCTACTGATAGTATTGaaagGAAGGGCAAAATTGATACCCCTAAAACTCCCACCACCCCGACCAGCCCCATGTCACCCAGCTTCAGTTCTGCCGGGGGTCCGCTATCCCCTCACCTCACTACCGGAGACTCCGTCAGAGACAAGTGCATTGAGATGCTGGCAGCTGCCCTGCGCACAAACAACGACTTCAAGGATTTTGGAACTAACTGTGACAGCATGGCTGCAGAGATCGAAGATCATATCTACCAGGAGACAAAGGCCACTGATATGAAATACAAAAACAGAGTACGCAGTCGCATCAGCAACCTGAAGGACCCGAAGAACCCTGGGCTACGCAGAAACGTCCTCGCAGGAAGCATTGACTTGAGCCGCATCGCCAGCATGTCTGCTGAGGAGATGGCCAGTGACGAGTTGAGAAAGCTGAGGAACGTTCTCACCCAGGAGGCCATCAGGGAGCACCAAATGGCCAAAACTGGTGGCACCACCACCGACCTGCTGCAGTGCGGCAAGTGCAGGAAGAAGAACTGCACCTACAACCAGgtgCAGACACGCAGTGCTGATGAGCCAATGACCACATTTGTACTGTGTAATGAGTGTGGTAACCGATGGAAGTTCTGCTGATGCCTTCCAGATGAGACCAGGTTTTTTAGTCCCAGCATAATgtactgcattttttttttaaataaattattgcagCTAATAAGGTTTACAGATAACAGTGCTCTTACAATTTTTACTTGACATTTTGAGATTTGTAAGCATGAGCTAATAATCAGGGTTTGCTTTATGTGGAATTGAAGACTGAGCATGATTGTCAGGCTGATGACTGTTAACACATCAATAATGATCAGGGTGCTGTCATGATGGAAAGACCATCCAGTTAATATGCTTTGCATACTACAGCAGTTCACTTTGTATATATCTAATAAAACTGCATAAATCATTAGTACGATGGCTTTTTAAACTCCCGTTTTAATAAAGAATTTTGACAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639682.1 lncRNA upstream 79120 17500589 ~ 17504921 (+) True LOC120562054
TU97564 lncRNA upstream 121014 17427828 ~ 17463027 (+) True G73027
TU97549 lncRNA upstream 180414 17392268 ~ 17403627 (+) True G73019
TU97325 lncRNA upstream 518130 17065589 ~ 17065911 (+) True G72862
TU97344 lncRNA upstream 592052 16991716 ~ 16991989 (+) True G72879
TU97801 lncRNA downstream 330923 17923950 ~ 17926628 (+) True G73186
TU97833 lncRNA downstream 521688 18114715 ~ 18116323 (+) True G73216
TU97857 lncRNA downstream 531967 18124994 ~ 18127318 (+) True G73230
TU97858 lncRNA downstream 531967 18124994 ~ 18126954 (+) False G73230
TU97859 lncRNA downstream 532053 18125080 ~ 18126954 (+) False G73230
XM_039805507.1 mRNA upstream 16775 17562473 ~ 17567266 (+) True tent5ba
XM_039805505.1 mRNA upstream 33847 17541057 ~ 17550194 (+) True zdhhc18a
XM_039805506.1 mRNA upstream 35669 17541057 ~ 17548372 (+) False zdhhc18a
XM_039805504.1 mRNA upstream 44619 17536530 ~ 17539422 (+) True pigv
XM_039805501.1 mRNA upstream 49708 17520311 ~ 17534333 (+) False arid1aa
XM_039804793.1 mRNA downstream 24721 17617748 ~ 17623689 (+) True oprd1b
XM_039804751.1 mRNA downstream 146805 17739832 ~ 17741380 (+) True LOC120561605
XM_039804753.1 mRNA downstream 148859 17741886 ~ 17747026 (+) True stmn1b
XM_039804754.1 mRNA downstream 157903 17750930 ~ 17755055 (+) True paqr7b
XM_039806002.1 mRNA downstream 499276 18092303 ~ 18105749 (+) True si:dkey-34d22.1
XR_005639656.1 other upstream 123714 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 131473 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 215266 17368703 ~ 17368775 (+) True trnar-acg_16
TU97163 other upstream 1511840 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 2028089 15553464 ~ 15555952 (+) False irx4a
TU97725 other downstream 52486 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 157929 17750956 ~ 17779130 (+) False paqr7b
XR_005639678.1 other downstream 806029 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 806029 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 822071 18415098 ~ 18420327 (+) False kcnn4

Expression Profile