RNA id: XM_039807068.1


Basic Information

Item Value
RNA id XM_039807068.1
length 1707
RNA type mRNA
GC content 0.44
exon number 4
gene id eva1ba
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 26712449 ~ 26725090 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTGCTTCTTGTGGATACGAGCCGGGAGAGAGAAAACTCTGTTACTCACTTCGTCTCAACTTCGAGAGGAAGTTACCACCTCTTCCCTAGactctgcacacacacttaggcagaaacacacacacacacgcacacacacacacaaacacacacacaaacacacacactcttcaggACTTGACCACAGCAGCAACAAGGAATCAACTGAAACAGACAGGACTGCTCGTAATGCTGTGTTTCTTTCAAAATTCGGAGGGAAAGAAGGCTTTGCCTAAAGCTTTCTGTGTGGACTGAACAGTTTCAGAGGGACAATTCTTGTCATCACAGACCGGATGGCCAAATGAACTGTTTAGACTGAGGACCAAAGATCACATGCCCTGATCCAACGTCAAAggagagaaagcgagagaagCGTGATCATTCTTCAACTTCTCATTAAAACTATGAGCTGGGACTGAGGACGTGCTTCATAGTTTAATTTTGTGGTGTGAGGAAATCAAAGTCAAGCTCACCATGGatgtgaagaaaaaagaaatggacCTCTTGAGCAACAGCATAGCTGCATATGCACACATCAAAGCCAACCCAGAGAGCTTCGGCCTTTACTTTGTGCTTGGAGTGTGTTTCGGCCTGGTGCTGACGCTCTGCCTCCTGGTCATCCGCATCTCCTGCAAGCCGCGGACCAATGTCGCCCCCTCCACGCCGGAGAAAAAACACTTAAAGGACATCAGCGAGGAGGACGAGGAGAGTGAGGACGATGACGATGAAGATGGGGATGATGTAGAGGCACCCATCCCTTTGCCCAGCACAGAAATCCCTGTTGGTAATcataccagccaatcagatgggACACTGAGTGTGAACGTATTTACTTCAGCTGAGGAGCTGGAACGGGCACAGCGACTGGAGGAGAGGGAACGCATCATACGTGAGATCTGGAGGAATGGCCAGCCTGATATCCTGGGGTCGGGAACAGGGACTATTGGAAGAGTGCATTACTACTAAGATACACGAGGCTTCAGGGGAAACACTCTGAGCTCTGTGAAGGGCAGACAAGGACCTTTGGGTGGGCCAGATGTCCCTGAAGCCTGTGAGACTTGTGTTAAATACAAAGCAACATGATGGAAACAGGACAGCAGTGATGTGACACATTGATATGCAAAAATACTCAGCTCTGACACAGCTGAACTATGTGATATTGCACTTCCCATGTAGCAATGCTATGCGACTACATGAAATTTAAACAAAGAAGTGTTTTAAAGACTGATTAATCCATATGGAAAAGATGCAGTATGAATGTGGGAGCAGATGGACACTTGAAGTAACAGCACGGTTGGAAGTAATCAGTCTATTGGTGCTTGATGACAAAAATGCACACAACTTAGTTAATGTATGTAGTACGTGGAAAATTAAAGCATATAAGGacaatgtatgtactgtattttgtaATGAAGATTAATTGTGTGCAGTGAGGACAACTGTCCTCTAGACTGGTAAGTTTGTGGGGAAAAGAAAACAATCTGTTAAGTACTGTTaaaggaaattacattttttgaacaaGCACATATCAATCAATTTGGGGGGTCAGATTACAgagtataatgtaaaaacaattcaaattgGAGTCTTTAATTTCTCCATGCCTGTGTTTTCAGGGATAATTCCACCAAAGGAAATGACAGAATTAAAGTATTACGCTGAaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102051 lncRNA upstream 35232 26676995 ~ 26677217 (+) True G76276
TU102048 lncRNA upstream 64878 26645384 ~ 26647571 (+) False LOC120562432
TU102049 lncRNA upstream 64878 26645384 ~ 26647571 (+) True LOC120562432
XR_005639860.1 lncRNA upstream 112338 26576712 ~ 26600111 (+) True LOC120562862
TU102093 lncRNA downstream 6216 26731306 ~ 26732902 (+) True G76313
TU102133 lncRNA downstream 139630 26864720 ~ 26865555 (+) True G76338
TU102202 lncRNA downstream 290050 27015140 ~ 27016036 (+) True G76393
TU102206 lncRNA downstream 290373 27015463 ~ 27016107 (+) False G76393
TU102230 lncRNA downstream 331693 27056783 ~ 27057005 (+) True G76412
XM_039805976.1 mRNA upstream 36957 26656953 ~ 26675492 (+) True stk40
XM_039806861.1 mRNA upstream 57350 26648212 ~ 26655099 (+) False oscp1b
XM_039806859.1 mRNA upstream 57350 26648213 ~ 26655099 (+) True oscp1b
XM_039806860.1 mRNA upstream 57350 26648214 ~ 26655099 (+) False oscp1b
XM_039806146.1 mRNA upstream 64834 26646267 ~ 26647615 (+) False LOC120562432
XM_039805832.1 mRNA downstream 161478 26886568 ~ 26889835 (+) True dnali1
XM_039807189.1 mRNA downstream 218146 26943236 ~ 26955284 (+) True rspo1
XM_039804667.1 mRNA downstream 288003 27013093 ~ 27015102 (+) True utp11
XM_039804702.1 mRNA downstream 578220 27303310 ~ 27305006 (+) True LOC120561567
XM_039805412.1 mRNA downstream 626761 27351851 ~ 27355833 (+) True pnrc2
TU101929 other upstream 569822 26139901 ~ 26142627 (+) True G76192
TU101746 other upstream 1208397 25502600 ~ 25504052 (+) True apoc2
TU101741 other upstream 1219292 25491814 ~ 25493157 (+) False apoc1
TU101448 other upstream 1723330 24915254 ~ 24989119 (+) False LOC120561858
TU101208 other upstream 2275630 24435139 ~ 24436819 (+) True G75644
TU102095 other downstream 83028 26808118 ~ 26815391 (+) True G76315
TU102152 other downstream 158360 26883450 ~ 26886546 (+) True G76355
TU102237 other downstream 559448 27284538 ~ 27288457 (+) True G76417
TU102349 other downstream 1223793 27948883 ~ 27952580 (+) True G76511
TU102453 other downstream 1516693 28241783 ~ 28245161 (+) True G76581

Expression Profile