RNA id: XM_039807105.1


Basic Information

Item Value
RNA id XM_039807105.1
length 1551
RNA type mRNA
GC content 0.52
exon number 8
gene id bves
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 9127850 ~ 9144754 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAGagccctcccccccctccatcCCCCATCTGAGGGTCCAGCCTACAGTCACCAGCAGTGTCTCAAGTCTTTCACAAAACCCATTCCTCCTTCTTTGCTGTACCACCGGCTGCTGCTGAATCGTTTTCAAGGTGACCGTGCTGCAGGATGTCTTCTACCCCAGAGCTGCCCCCCTTCCTCTTCACCACGCTGCCCTCCTTCCCCTCGGCCACTCCAGGAGTCCCGACGGCGGAGGTCAATGCCACCTCGTGCCAGGAGTGGGAGCAGGCCCACCACCTCCTCTTCCATCTGGGGAGCCTGTCCCTGCTGCTGGGTCTGGTCATCCCTACCACCCTGGGCCTGCACATGATCCTGCTGCGCCTCCTCCTGATGACAGGATGTGGTTTCTTCATTGTGTGGGCGACTCTGTACAGGTGCAACCTGGATGTGATGGTTTGGAACGTGGTGTTTCTGGTGGTCAACTTCATGCACTTGTTCTTCCTGCTGTACAAGCGCAGGCCGATTAAGATCGACAGGGAGCTGCGGTCCATCTACAAGCGGATGTTTGAGCCCCTCCATGTGCGGGAGGCTCTGTTTCAGAGGCTCACGGGACAGTTCTGCACCATCCAGACCCTGAAGAAAGGCCAGGCCTACGCTGCCGAGGACAAGACGTCTGTGGACGAACGCCTCAGCATTCTCCTCAAAGGAAAGATGAAGGTATCATACCGAGGCCATTTCCTCCACAACATCTATACCAATTCATTTATTGACTCTCCAGAGTTCAGGTCCACTGAGAtgcacagaggagagaagttTCAGgtgacCATCGTGGCAGAGGAGAACTGTAAGTTCCTGTGTTGGTCTCGAGAGAGGCTCACCTACTTCCTGGAGTCAGATACTTTCCTCAATGAGGTGTTCCGGTACCTCATTGGCAAAGACATCACCAACAAACTGTACTCTCTGAATGACCCCACACTCAGTGACAAGGCAGTGAAGAAGATGGAACGCCAGCCCAGCCTGTGCTCTCAACTGTCGATGACGCAGATGAGGAACAGCATGGCGAGCACCAGCGACACTGACGATGTCCTGAACCAGATCCTACGAGGAGGATCGGCTGGATCATCGCTCCaatccCCTGGCACTAAAACCTCCTCAAAGATGAAGCCCATAGAAGAAGGCATGGAGGATGACGTTTTTGAAGAACCTGCGCCCTCCAAGTCTCGCCGTTCCACTAAGGAAGTGTAGCCAGCATGCATGGGAAGAGAAtagattagataatactttattcatcccacaatggggaaattcacttgttacagcagcagtttttccacaaGATCAAATGCATATTATGCTATTTGTTTAGCAACCTAACGCCCAGAGCCTGATTGATACACCGGCATGGCCGACGTTATCAGCCGTGCCGTTTTCCTAGGTAAATAATGTCTGACTATATGCTGTCATTTAGAAACAGTGTCTCCattacatagtttgtccaccagagagcactgacaagtttatttttacacTCTAAAATGTTACATACTATCTTCGTCACaattctttaaaa

Function

GO:

id name namespace
GO:0061436 establishment of skin barrier biological_process
GO:0070830 bicellular tight junction assembly biological_process
GO:0090504 epiboly biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95621 lncRNA upstream 2118 9123163 ~ 9125732 (+) True G71517
TU95622 lncRNA upstream 2118 9123242 ~ 9125732 (+) False G71517
TU95620 lncRNA upstream 2118 9123322 ~ 9125732 (+) False G71517
TU95576 lncRNA upstream 351342 8770205 ~ 8776508 (+) True LOC120561899
TU95570 lncRNA upstream 358786 8768688 ~ 8769064 (+) True G71475
TU95667 lncRNA downstream 175698 9320452 ~ 9320696 (+) True G71553
TU95668 lncRNA downstream 179063 9323817 ~ 9324017 (+) True G71554
TU95671 lncRNA downstream 226250 9371004 ~ 9371948 (+) True G71557
TU95676 lncRNA downstream 310621 9455375 ~ 9455641 (+) True G71562
TU95707 lncRNA downstream 683840 9828594 ~ 9829307 (+) True G71591
XM_039804863.1 mRNA upstream 4763 9115711 ~ 9123087 (+) True popdc3
XM_039806986.1 mRNA upstream 26348 9088184 ~ 9101502 (+) True LOC120562991
XM_039806987.1 mRNA upstream 26348 9088189 ~ 9101502 (+) False LOC120562991
XM_039805233.1 mRNA upstream 353028 8760046 ~ 8774822 (+) False LOC120561899
XM_039805857.1 mRNA upstream 623398 8454764 ~ 8504452 (+) True LOC120562241
XM_039805944.1 mRNA downstream 2861 9147615 ~ 9190089 (+) True hace1
XM_039805945.1 mRNA downstream 2863 9147617 ~ 9190089 (+) False hace1
XM_039805613.1 mRNA downstream 862521 10007275 ~ 10200334 (+) False ascc3
XM_039805615.1 mRNA downstream 862904 10007658 ~ 10200334 (+) True ascc3
XM_039805614.1 mRNA downstream 863152 10007906 ~ 10200334 (+) False ascc3
unassigned_transcript_348 other upstream 278130 8849632 ~ 8849720 (+) True trnay-gua_42
unassigned_transcript_347 other upstream 278513 8849249 ~ 8849337 (+) True trnay-gua_41
unassigned_transcript_346 other upstream 279279 8848483 ~ 8848571 (+) True trnay-gua_40
unassigned_transcript_345 other upstream 280369 8847392 ~ 8847481 (+) True trnay-gua_39
unassigned_transcript_344 other upstream 280695 8847067 ~ 8847155 (+) True trnay-gua_38
TU95730 other downstream 1062661 10207415 ~ 10208197 (+) True G71610
TU95885 other downstream 1640900 10785654 ~ 10867832 (+) False LOC120562569
TU95893 other downstream 1675541 10820295 ~ 10821417 (+) True G71743
TU95894 other downstream 1675541 10820295 ~ 10821500 (+) False G71743
TU96068 other downstream 2454283 11599037 ~ 11616242 (+) True G71896

Expression Profile