RNA id: XM_039807131.1


Basic Information

Item Value
RNA id XM_039807131.1
length 7857
RNA type mRNA
GC content 0.50
exon number 34
gene id rims2a
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 1982404 ~ 2171236 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctctctccccccttctatccctctctctctttctccccctctccctctctctgtcattGCATCCATTTTTGTGCATTTAAGAAATCTCCAAGAATTACCAACCTGGAGGACAGCGAGCTAACCAGAGTGACAGAGGAGGGTTAAGGACTCCAAACGAAAACAAACAAGGACGGACCGGGGCATCTTTTATTCCAGCATGAGAGTAAAACCTTTCTAAAGGATGGCAGCGATGGGTTAGACAGGATTTAACATGACtgcaaaataaaagCCACTGTGTGTAAAAGATGTCTGCTCCACACGGGCCCCGGGGCGGCACCGGCCCTGCTGCTGCCTCAGCGGCCGGCGCCATGCCGGAGATGCCGGACCTCAGCCATCTCAccgaggaggagaggaagatcatCCTCGGTGTCATGGACCGACAGAAGAAGGAGGACGCGAAGGAACAGTCGATGctaaagaTCAAAGAAGAACCAAAGCCTCAGCCGGCACAGTGGTTTCCCTTTAGTGGGATCACTGAGCTGGTAAATAACGTCCTTCAGCCCCAGCAAAAGTCCCAAAATGACAAGGAGCCAGAGCCAGACGCGAAGTTGCACCAGCAGTTTGAATCGTACAAGGACCAGGTTAAAAAGATGGGGGAAGAGTCTAAGCCGACTCAGGACCAGAACAGCGAAGCCCCAACCTGCGGGATATGCCACAAAACCAAGTTTGCCGATGGCTGTGGCCACCTCTGTTCATATTGCCAAACCAAATTCTGTGCTCGGTGCGGAGGACGAGTGTCTCTGCggtcaaataagGAGGACAAAGTGGTTATGTGGGTATGCAACTTGTGCCGAAAACAACAAGAAATCCTCACCAAATCGGGGGCGTGGTTCTACGGCTCGGGGCCTGGTCAGGTGCTGTTTGAGGGTGGGCCGCAGGGGAAGAAGGCCAAACTGCAGGACCCGTCCCTGTACCCCTACCAGGGAGCCTCAGGGGACTTGACACCAGCGTCAGACAGAAGCAGACCTCACGGCGGACTCCTGCCCAGACAGTCGTCCCTTGACAACGGATCGGGGCTGAGGTACGACGCACCCATAGACAGGAAACGAAGCCCATCTGCATCCAGGGATCCAAACCAAAAATACGACCAAAGGGAGGGGGGCGACTACTCGCAGTATGCCCCGACGGACGGCGGCATGCCCAGATCACCGTCTGACTATGGGGATGGGGACCCTCGGCGGGCTCCGCGGGGCCATCACATGTACCCAGACGCAGATGCGGCACGGATGGGTTACCGGGACCGGCGGGGCCCCGGACGCTGGCACTCCCAGGAATACCCGCTGGACCAGGAGCTAGATGGACCACCCAGCGAGTATGACCTCCAGCGGCAGCGCCAGGAGGAATTCCAGACGCGCTATCGCAGCGACCCCAACCTGGCACGCTACCCTGTCAAGCCGCAGCCCTACGAGGAGCAGATGAGGATGCACGCCGAGGTGGGCCGCCTGCGGCACGAGCGCCGCCATAGTGATGTCTCTCTGGCCTACACGGAGCAGGACGACCCAGGCCCCATCCGGCTGTCCCGTCAGCATCTCACCGAGCACCGGCCGCCAATGGCGGGACAGCGCTCCTACTCCGTTGACCGCTCCTCTCCTGGGCCCATTGGTCCCGGCCTCGGAGGCCACAGAAGCTCCAACCACAGCCCCCCGACGCCGCACCGTAGCCCCGTGCTGGGCGACAGATCTGGGGACCTGCGGAGAGGCGACATGGGTGGAGGCGGGGATCCCATGAGGAGGCAGCAACACCACTTGGACCCCAATTCAGCTCTCCGCAAGACCAAGAGGGAGAAGATGGAGAGCATGTTGAGGAATGACTCTCTCAGCTCGGACCAGTCGGAGTCTGTGCGCCCGCCACCCCCCAAGCCCCACAAAACCAAAAAGGGAGGAAAGATGCGGCAGGTGTCGCTGAGCAGCTCGGAGGAGGAGCTGGCCACCACACCGGAGTACACCAGCTGCGAGGACGTGGAGATAGAGAGTGAGTCAGTCAGTGAGAAAGGGGACAGTCaaaggggaaaaagaaaaactattgAACAGACATTTATGTCCGAGCCGACACACACCTTATCTGAGAGGCAAAAGAAAATGGTACGCTTTGGGGGACACTCATTTGAAGAGGACTTGGCATGGTGTGAACCGCAGGTTAAAGACTCGGGAGTTGATACGTGCAGTAGCACTACCCTAAACGAGGAGCATAGCCATAGTGAGAAGCACCCGGTGACGTGGCAGCCGTCCAAAGATGGGGATCGCCTAATAGGGCGTATTTTACTCAACAAGCGCATGAAAGATGGAAGTGTGCCTCGAGACTCAGGAGCTCTGCTTGGTCTGAAGGTGGTGGGAGGCAAGATGACAGAATCTGGTAGACTTTGTGCTTTTATCACTAAAGTGAGAAAAGGAAGTCTAGCAGACACTGTTGGACACCTCAGACCAGGTGACCAGGTGCTGGAGTGGAATGGGAAGCTTTTACAAGGAGCCACATTTAAAGAAGTTTACAATATCATTCTAGATTCTAAGCCTGAGCCGCAGGTGGAGCTGGTGGTCTCGCGGCCTATAGGaGATATTCCAAGGATACCAGACAGCACACATGCACAACTGGAATCAAGTTCGAGTTCTTTTGAGTCTCAGAAGATGGATCGCCCGTCCATCTCCGTCACGTCCCCCATGAGTCCCAGCATGCTGAGGGACGCCCCCCAGTACCTGTCAGGACAACTCTCAGTCAAATTGTGGTATGACAAAGTGGGCCATCAGCTAATCGTCACCATCCTGGGCGCCAAAGACCTGCCAGCCAGGGAAGACGGCCGGCCCAGGAACCCTTACGTCAAAATCTACTTCCTCCCTGATAGAAGtttgAATTATTGTTCCTCTAGTGACAAAAGCAAGAGGAGAACAAAAACGGTAAAGAAATCCTTAGAGCCCAAATGGAACCAGACCTTTATGTATTCGCCGGTGCACCGGCGGGAGTTTCGGGAGCGCATGCTGGAGATCACTTTGTGGGACCAAGCCAgggtgagggaggaggagagcgaATTCCTGGGAGAGATCCTTATTGAGCTGGAGACAGCTCTTCTGGATGACGAGCCACACTGGTACAAGCTGCAAACCCACGACGTGTCCTCCGTGCCGCTCCCACGTGCCTCCCCGAACACACAGCGCCGCCAGCTCCATGGAGAGAGTCCGACGCGGCGGCTCCAGAACAAAGGCTCATATTCATACAACTCAGGATCCCAGAGGATAAGTGACAGCGAGATCTCAGACTACGATTGTGAAGATGGTGTTGGGGTAATAACAGACTACCGGTCCAATGGCAGAGACTTCCAGAGCTCCACGTTGTCTGTCCCCGAGCAGGTGATGTCGTCTAACCATTGCTCTCGGTCGGACGATATTAACCGGGCGCGGTCGCGCTCTCCCAGCGTTCCCCCACCCTCCAGCAGAAGTCTGGACCCAGCCTTTGACCTTAGGCCTTCTCAGTACAGCTCCTCCACTAGAGTGGACCACCACAGTGTGTCCGAAGATAACTACTCACCTGAcagCCACAACCATCGCGTGTATCCGATCTGCCGAGAGGAAGCAGTCAGGTTACTGCGTTCCACTAGGATGGCCCGCGCCTATTCTGAGGGCGCCTACTCCTCCGACTATGACTACGAGAGGAACCACGGAGCCATGGATAGACACGAGTATCACAGCAGGTCCCGCTCTGCAGACCAGCGGCCCACTATAGAGCGCCCCACATCCCGCTCGCGCTCCACTGAACGCCCCCACGACTCTTCGCTCATGAGGTCCATGCCGTCTCTACCATCTGGGAGGTCCGCCCCCCCCTCACCTGCCTTGACGAGGGCGCATCCTCGTAGTGGATCAGTCCAGACCAGTCCCACCAGTACCCCCATGTCCAGTAGACGAGGACGCCAACTCCCACAGCTTCCACCCGCGGGGAAAGAGAGAAAGGGAACAGGGGAGGAGCTCGGGGCACCTGAACCCGAAAACGGTCGCCCAGGTATGGACATGGAGGAGAGGACCAGGCAGATGAAGCTGAAGATGAACAAGTACAAGCAGGGAGCGGGCTCCGACTCCAGGCTGGAGCAGGACTACCACAAGCGTTCGGGCAGAGATCCACGGGGCTCAGATAACCTGTCGGCCAAGTCCTCGGACAGTGATGTAAGCGACGTGTCCGCTGTGTCGAGAACCAGTAGTGCCTCTCGGTTCAGCAGCACGAGCTACATGTCTGTCCAATCAGAAAGGCCGCAAGGAAACCGCAAAATCCGCCAGTTGCGATCAAGGAGCCAGTCTCGCGAGGGGGACGAGCAGTTAGGAGAAGTGCTAGAGGCGGAGGGGACGGGTGGGGGAGGACGAGCAGGGGAAGGGCGGAGGGCGAGTAAAGAGGGGAGATCgcaggaagggaggaagggatcGGGGGGGAAGGTAGACACAGACAAGGAGCATCAGGAGGATTTGGTGGAGAAAGAAGAGGACTTGCACCAGAGGAGTATCTCAGAGACAGACCTCAGgCAGATGGGCTCGTCGGGCGGGGTGAACATGACCAAGAGCACAAGCGTCAGCGGCGACATGTGTAACCTGGAGAAGACGGACGGCAGCCAGTCAGACACGGCGGTCGGCACGGTAGGCACCGACGAGAAGAAGAGGCGCTCCAGCATTGGTGCCAAAATGCAGGCCATGGTTGGCATGTCGCGCAAGAGCCGGAGCACCTCTCAGCTCAGCCAAACAGAAGCGGGAGGTAAGAAGTTACGCAGCACGATCCAGAGGAGTACGGAGACGGGCCTGGCGGTGGAGATGAGGAGCAGGATGACTCGGCAGGCCAGCCGGGAGTCCACAGACGGCAGCATGAACAGCTACAGCTCCGAGGGAAATCTCATCTTCCCTAGTGTGAGGCTCTCCTCAGAAGCCCAGTTCAGTGACTTCCTGGATGGTCTGGGCCCCGCCCAGCTGGTCGGACGACAGACGTTGGCTACTCCACCTATGGGTGACATCCAGATCGGTATGGTGGACAAGAAAGGAGCACTGGAGGTGGAGATTATCCGAGCCCGTGGCCTTGTGGGAAAACAAAGTTCCAAGGCACTGCCAGcACCATATGTAAAGGTCTACCTTTTGGACAACGGAGTCTGCATagccaaaaagaaaacaaaagtagcAAGAAAAACCTTGGATCCTCTTTACCAGCAGCAACTGCCGTTTGAGGAGAGTCCAGGAGGGAAGGTATTACAGGTCATCGTTTGGGGCGACTATGGACGTATGGACCATAAATCCTTCATGGGAGCAGTTCAGATACTGTTAGATGAGCTGGACCTGTCCAACATGGTGATTGGCTGGTTTAAGCTCTTCCCTCCTTCATCACTGGTGGACCCTACTCTGGCCCCACTGACAAGAAGAGCTTCCCAATCCTCGCTGGACAGTTTCTCTCGATCATAGCAGCGTGTGGACTGATAGCGTTGTTGTAGCAGCCAGTGTTGCGATTACAGGTCACGCCCCCCGGTTACACTGCATGCTTGATGTTGTGTCTTCTGAGCCTGTTTCTAGGGGGTGCATATGTGATCCTGTGTTTTGAGCAAGAACGTTGCGCACATTGTGCACATGGCGAAGCGTGTTGCAAAGCGCCTGGCGGCCGGGATTGCCaggtgttgtttgttgttgtttggaggAAGCTGGAATGAACTCCTTAGCACGAGGAATCCGTCAGTTCCAGGTTTTCATCCAATTCGAAGCCATGGGGGTCAGTACTGGGAACCGCAAAACGAGTTCTACAGAAGCCCTGTTtcgaatgaaaaataaatgttttgcttttattatttttctttttttttccatcttttttttcttctttttttatgtcaGTGTACTTGTATCTGAAGGGGGGTGACACTGTTTCTATCCAGATGCTTGGTCATGCCACGCCAACAGACCTAGCTGTGTAGATTGGGGGAGTTTTGGAGACCATCACTTTGGGTGAGGTGTGTCCCAACTTGTATCCACACTCCCCCAGACCTCTAAAGAAAATACCCCGCACACTCAAGGTTTATGTACTGAATCAAACCGTACTGGTGAGTCACCAGAAAGTTAATCAGAGGCAATATAGAAGTGGCTACCAtcaacactccagaatatacagTAACAATCCCAACCCCATGAAAAGATGTACAATCTACCATCATTCTTTCTCTGTTGATATATTGTATGAAAATTAAAtgagaaaacatattttttttcccctttaagTTCATTTGCATGGACAAAAATTTAGCTgaatcaaaaaaaaagaaaagaaaattattttcttGAGGCTGCAACttgcaaaaaaagacaaagaaaaataaaacagatcAGCCATTTTCAacaatttatattatttttaaagataaatTTCACTAGTGCATGGTTTTCAAGGGAAGTGAATGCAACATCGtgattaaaaaagaagaagacattgTTTATCATTCTTTAGACCATTCATGAGTCTGTGTGTTGCAGACATGCAGATAAGGGAAACTTAAAGGAAACTTTTGGAGCTatttaacagaaaatgtttatgtgacaaaaagtgataatgaaaataaatgtaaattatttatttcattttaaaaggctcaAGGCTTATAAAGATAAAAATTATGTGCAAATTGTacatgtttctctttttcttccttgtCCCAGGGTACTTCAGGGTACTACTTATTGCTACCATTGTTCAGTCCCCTGATAATGTCCAGATTTTAGGACTGTTGGTTATTTTACAGTTCTGTATTGTTTcaggatgtattttattttggatttgatttgtttaacaAGCATGTTGAAAAGGATTTTCTGCAACATGGCTTGGGCACACCTTACAGTAACTCAGCATGTTTTGATAAAGATGATATTTGGAATTTTTGCAGTTTCTTGTACAGTGCATGTCAACTTCATTACTTTTCTCCCTCACCTTCAATTGAACTCTGCAGCAAATTAGTTCTTGGTCTTCTGTGGCCAATTTATTGAAGttttaacaaaaacattccACCCCCAAGGTCATATTTTCTTTCAGGTTtttgaggagaaaaaaaaaagtgacaaggaaaatattttatatttaatggaGGTTGATGAAACAGTCGTGATTGCAAgtgtattttatttcagtattgttGACGAACATGCAAAAATAATCTGTATTGGTACAGCAAGAGGTCTATACCTAATCAAGAGGCAGCAAACATGCAAGAGATGTATGTGGCTCTGGTTCAATTTTACAGCCACTGTTTGTGAAGATGAAGTTCAAATAACAAGGgatattgccacagaaaatgtgttttttttcttgttttaatgaaaatgaaattaatTTACTATATTTTTGTTAGTTTTATTTAAAAGCCAAGaccagtttattttttattttctatttttagtaATTATAAATACCTCCCATGTCTGGGAAGTATATGAATCTTATAGTTGCAGTATGTCTGAATGAAATTGAACTGAGGCATTATTCCTTTTCCAGATGGCGATATTGCGTTTCAATGTCCAAGAAAACCTTGTTGCTGTAACAAGCTACggtatatattttaattttcattgtAAATACCTTTAGATGTCAgaatttgaataaacaaactacCATGAATAGATTGATAGACTCTTTTGGAACAGGAAAAATGCCTCACATGATGACAAAGACATATGTTATTTATCCTTTTGAATGCCTTTTAAGTTTCTCTTTTTGGTGCAATGTGTTAATGCCAAGGCTATGTCTTGGTTAAGTATGGTTGAGTACAGAGATTTATGTaagttatttttcaaattaaaaataaaaaaaattgatattACACTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93670 lncRNA downstream 18097 1956191 ~ 1964307 (-) True G69932
TU93665 lncRNA downstream 35247 1946945 ~ 1947157 (-) True G69927
TU93653 lncRNA downstream 256522 1725184 ~ 1725882 (-) False zfpm2a
TU93620 lncRNA downstream 306053 1676118 ~ 1676351 (-) True G69893
TU93593 lncRNA downstream 627379 1354298 ~ 1355025 (-) True G69866
TU93857 lncRNA upstream 437006 2608242 ~ 2608898 (-) False G70090
TU93858 lncRNA upstream 437006 2608242 ~ 2608898 (-) True G70090
TU93846 lncRNA upstream 439116 2610352 ~ 2611804 (-) True G70081
TU93861 lncRNA upstream 466826 2638062 ~ 2638288 (-) True G70092
TU93863 lncRNA upstream 472637 2643873 ~ 2644416 (-) True G70094
XM_039805130.1 mRNA downstream 3194 1977271 ~ 1979210 (-) True LOC120561841
XM_039805936.1 mRNA downstream 121238 1725158 ~ 1861166 (-) True zfpm2a
XM_039805937.1 mRNA downstream 231998 1725158 ~ 1750406 (-) False zfpm2a
XM_039805876.1 mRNA downstream 535150 1376272 ~ 1447254 (-) False oxr1a
XM_039806838.1 mRNA upstream 2868 2174104 ~ 2192793 (-) True dcaf13
XM_039806865.1 mRNA upstream 30302 2201538 ~ 2207789 (-) True LOC120562915
XM_039806864.1 mRNA upstream 30302 2201538 ~ 2207784 (-) False LOC120562915
XM_039806863.1 mRNA upstream 30302 2201538 ~ 2207783 (-) False LOC120562915
XM_039806314.1 mRNA upstream 38620 2209856 ~ 2226422 (-) True LOC120562568
TU93283 other downstream 1249656 729924 ~ 732748 (-) False osr2
unassigned_transcript_293 other downstream 1953721 28610 ~ 28683 (-) True trnai-aau_14
unassigned_transcript_292 other downstream 1954078 28254 ~ 28326 (-) True trnar-ucg_8
unassigned_transcript_291 other downstream 1955087 27245 ~ 27317 (-) True trnar-ucg_7
unassigned_transcript_290 other downstream 1955774 26557 ~ 26630 (-) True trnai-aau_13
TU94269 other upstream 1457897 3629133 ~ 3629818 (-) True G70407
XR_005639920.1 other upstream 1808075 3979311 ~ 3979414 (-) True LOC120563202
TU94368 other upstream 1901088 4072324 ~ 4077779 (-) False eny2
TU94369 other upstream 1901088 4072324 ~ 4077779 (-) False eny2
TU94370 other upstream 1901088 4072324 ~ 4077779 (-) True eny2

Expression Profile