RNA id: XM_039807181.1


Basic Information

Item Value
RNA id XM_039807181.1
length 5686
RNA type mRNA
GC content 0.46
exon number 20
gene id LOC120563092
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36075620 ~ 36090492 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcagagggaggaagacagactGACGTCTAAGGGAGGGTTACGAGAACAAGAAGAGGAAGTTGCACCAGACAGAGgacctACTTGAGAAGATGAGTGATTTAGAAGAAGACGAGGACAGATCAAAGTCTCCAGTCTGCAACTGTCCCTCTATGGAGTGGGAGCAGTCTGAAGATGATCCTCAAAACCTCAGTAATgaacctggaccctcagacacaaaagaaaagaaaagtcatGTTTCTATGGAGGAGCAGCCATCCTGCTGTGCTTTGTGTCATGACATCATGAAGAATCCAGTCTCTACCAGCTGTGGACACTGGTTCTGCAGAGAGTGCATCACTTCATACTCGGAACAGTCTGCTTCATCAGGAGACTCTTCCTGTCCCAAGTGTGGAAAACAATCCAGAACAAGAGCTGGACTGCAGAGAGCCGGTCAGACCAGCACTGTACCAACAGATTGTGGTCTGCAGGCGGTTTCAGTTGGACATATAATCAGTCTGAAGACAAGATTTGAACATGTGACTGAAGGACCTATTAAAACAGGAACTGAAACCCCCCTAAACAGGATCTACACTGAGCTTTACATCAAAGCGGGACAGAGTGAAGGTGTTAATACCCAACATGAGGTGAGGCAGCTCGAGAGACCTTCCAAGATGAAGAATCTCGATGACTCTCCAATCAAGTGCTGCAACATCTTTAAAGCCTTACCTGaccaacagaaacacatcagaGTCGTTCTGACTAACGGTGTTGCTGGCGTTGGAAAAACCTGCTTAGTGCAGAAGTTCTGTCTGGACTGGGCAGAGGGTTTGGAAAACAAAGATATCAGCCTGGTGATCCCACTGTCGTTCAGGGAGCTGAACTTGATCAAAGATGAGCAGTACAGTCTTCTCAAGCTGATCCATGTTTTCCATCCAGCATTACAGAAGCTCACAGCAGACCAACTCTCTGGCTGTAAAGTtctgttcatctttgacggccTGGATGAAAGCAGACTTTTACTGGATTTCCTTAACAATGAGGTTGTTTCTGATGTCACAGAGAAGTCATCAGTTAACATGCTTTTAACAAACCTCATCGAGGGGAATCTGCTTTCCTCGGCTCTCGTCTGGATAACTTctcgacctgcagcagccaatcagatccctcctgcaTATGTTGACAGGGTAACAGAAGTACTAGGCTTCAATGACGCCCAGAaagaggagtacttcaggaagagaatTAGTGATGAAGAGCTgtccagcagaatcatctcccacatcaagacatccaGGAGCCTCTACATCATGTGTCTtctcccagtcttctgctggatcactgctgcGGTTCTGGACCACATGTTGACTACAGACCAGGGAGGAGAACTGCCCAGAACACTGACTGACATGTACTCACACTTCCTACTGGTTcagacaaagaggaagaagcaGAAGTATGCTGAGGGACATGAGACGAGTCCACAGGAGCTGATGGAGGCTGACAGGGAAGTTCTTCTGAAGCTGGGGAGGCTGGCATTTGAACAGCTGGAGAAAGGAAACATCATGTTCTACCAAGAAGACCTGGAGCAGTGTGGTCTTGATGTGACAGAGGCCTCGGTGTACTCAGGAATTTGTACAAAGATCTTCAAAAGAGAGAGTGTGATCTTCCAGAAAACAGTCTATTGCTtcatccatctgagtgttcaggagtttctggctgcagtCTATTTCTACCACTGTTACACCAACAGGGACACAGAGGTACTGGAGGACTTCCTGGGAGAAGATGGGGATAATTACCAAACCGTGAATAACCTCTACTATGAGAGTGACAGTGATGGTTATGAACATGATAACCCATCTCTGGATGTTTTCCTGAGGAGAGCCATGGAGAAATCTGTCAAAAGTAAAAATGGCCACCTAGACCTGTTTGTCCGCTTCCTCCACGGCCTCTCTCTGGAGTCCAACCAGAGATTGTTAGGAGGTCTTCTGGGTCAGATGGACAACAGTCCAGAATTGATCCCAAGAGCCATCAACAACCTGAAGAAGATAAACATGGACAAGATCTCTCCTGACAGAAGCATCAACATCTTCCACTGTCTGACAGAGATGAACGACCACTCAGTCTATCAGGAGATCCAAGAATTCCTGAAGTCAGGGAACAGATCAGAGAAGGAACTCTCAGAGATCCACTGCTTAGCTTTGGCCTACATGCTGCAGATGTCAGAGGAGGTTCTGGATGAGTTGGACCTGGAGAAGTACAACACATCACTAGAGGGACGACGGAGACTGATTACAGCTGTGAGGAACTGCAGAAAGGCACTACTTACTGGCTGTTACCTCTCAAATTCTCACTGTGAAGTTgtggcctcagctctgaagtccaacccctcccatctgaaagAACTGGACCTAAGTTACAACAAGTACCTGCAGGATTTAGGAGTGAAGCTTTTGTCTGATGGACTGAAAAGTCCaaactgtagactggagacGCTGAGattgAGGTACTGCAGTTTATCAGcgatcagctgtgcttctctggCCTCAGCATTGAAGTCCAATCcatcccatctgagagagctggatctGAGTGACAACAAgttgcaggattcaggagtagAGCTGCTCTGTGATTTTCTTAAGAGTCCacactgtagactggagactctgagattgAGGGGCTGCagtttgtcagagatcagctgtgcttctctggcctcagctctgaagtccaacccctcccatcttaGAGAGCTGCAGCTGAGTAACAACAAGCttcaggattcaggagtgaagctgctgtgtGATTTTCTGAAGAATCCACACTGTACACTGGAAACGTTGAGATTGTGGAACTGCAGTTTGTCGGAGATCAACTGTGCTTCTTTAGCCTCAGCTCTGAGGGCCAACCCTTCTGATCTGAAAGACTTGGACCTGAGTCATAACAACATTCAGGATTTAGGAGTGAAGCTGCTATGTGAttttctgaagagtccacaaTGTAGACTTGAAACTCTGAGATTGAGGGGCTGTGGTTTGTCAGGGATTAGCTGTTTTTCTCTGGCCTCAGCGctgaagtccaacccctccGATCTGAGAGAGCTGCAGCTGAGTAACAACGAGCTGCaagattcaggagtgaagctgctgtgtGATTTTCTGAAGAGTCCTCTCTGTAGACTGGAGATTCTGAGATTGTGGGGCTGCagtttgtcagagatcagctgtgcttctctggcctcagctctgaagtccaacccctcccatctgagcgAGTTGGAGCTGAGTGACAAGCTTCAGGATTCTGGAGTAAAGCTGCTCTGTGATTTTCTACAGAGTCCAAGATGTAGACTCAAGACTCTGAGATTGAGTCGCTGTggtttgtcagagatcagctgcGCTTCTCTCGTatcagctctgaagtccaacccctcccatctgacgGAGCTGGACCTGAGTCTTAACAACATTCTGGATTCAGGAGTGGAGCTCCTCTCTTGTCATGTGGAGAGTTCacactgtagactggagactctgagGATCAATGACAAGTTGATCACAGCTAAGACACACAAGAAAGATGACTCCAATGTGAAACGTGATGTGAAAACAAACTTgccagagaaaaacaaaaagGGTccaatatccttctcacctgaacacacaacTGTATCTTCATACAGGTTCAGGTGTCCCGGTCCAGGTGTGTTTCAGTGCGATTTGACTGGACTGGTGTTCGTTATGGCTCAGGAGGCGGAGCTGCTGTATAGTATTGTCCAATGGAACCAGAGCCTCCTCCAACCAGCTGGCAAGAAGGCTGCAGGGCCGCTCTTTGAAATCAAGAGCTCTGAGGATGCTGCTGTCCTTCAGCTCCACCTTCCACACTGTGAAACAAAGGATGCTTTGCTCTTTGATGGCCTGCTGTCTGTCGTCCACATCACTGATGATGGAATGAGCATCTTGGAGCCACTGGAGGTTACAGACACTCATGTGGTTGTGAAGGTCCCTCACCTCTCTGCCTTTGGCCTGGTCTGGGATTTCGTCAGAAGGTTTGTGAGCTTAATGCTGCCAATAGAGGGCCAAGTTCTGCTGTTCCTTCGACCCCCACGCGCAAGGTATCAAGTACTCGATGTATTTCTGCTGCCCGACAACATCCCTCTAGATGAGGTTGAAAAGAAACAACGAGGTGCTGAGTACCTCCCGATGTCATCTGAATGTCATCTCGGCATTGGTCAAAGTTACAGTGTCCACTGTGAACCCGAGGGCTTCACAATACAGCCTGAGCATGCAACATTTCACTTGAAGTATGGACCAAATTTCCATCCAACATTTGAAGTTTTTTTGACTACGGACACAGAGAAAGTGACTTTGACGGTCCAGGACCATGAGAGGACAGAAGTGTGGAAACGTCAGGTGTTACTGAAAGAGGACAGTGTCCCAGTAATGGACAGTATCCCATCAGAGGACAGCGTCCCAGTAGAGGACAGCGTCCCAACAGTGGATGGCGTCCCAGCTGACGAGAAGCTCTTCTCAGTTCGAATACAGTTTCTTAACAGAGTGACTGAACCTGTTCTGAATCAGCTTCTAGACAAACTTCTTGAGCGTCACGTGATCAATGATGCTGAAATGCAGTCGTTCAGAACAAAAGCCAGAGAAGACAAAGCACGAGACATGGTCGACACGGTACGAAGAAAGGGCGCTAATGCGAGCTCAGTACTGATCGCTGCTCTCTGTCAGGTGGACCCATGTCTTTTCAGAGTGCTGAACTTCAGATGAAGCAAGAGCAAGAAACTGTGGAGTGGGATGATTGTAAACCTTGATTGAGAAGTTCCTCTCATTAGTTACATTTGAGTGTTATGCCATGTAACATTATTAACAGTTTGCATCAATCTCCTTTCAAAACAAGAACAGAAAGCAAACAGAAACTCCAACCTGAAGGGGGGCAATTTAGAGCTGAAAATCTGTTGAACTAATTTAGAGGAATTTATTCTGGATTTACCCAATTTGAAGATGATGTTGTGAAATCTTAAATAAGGGAGAAtaggaggagaagagggagggCAGGACAAAATAGGAGTCAGGGCCAGagtgttgttctttgttttagCCACTAGATGGAGTCACTTCTCTAATGGACATAGAAGATGCAGCTGCAGCATCAGGCAGATGtgaaaatcagaaaaaaaaaacaattgagaatgattcattttgatgttaatactttttacttgagtacgattttaaatgaaatacttttacttgtaatatttctacactgtctgtgatattgctacttttacttgaaAAAAATATCTGAACAGTTCTCCCTCTCTACTGCATAAATGTCTGGCTCCTAAGGTCCCCACGTACCACCGCTCCGAAGGTCCCCACGGTTGGTTTGGGGTTATCACAGATATTGGCTCTTTTCTCTCTGGAGAACTGACTTATGACCTCAATCATAATTCGGACAAATTCTGGAGACTTTGCATTCTGACTAACTTGTGTTTGGTTTAATCTGTATGTACATTGCGATTTCTTTCTTGTACAGTCCTAGTTTgtgatcagtggtgtagtctaatgtattgtagtgggtatactgtattGTTTATGTATGGGGCTATATATATGGGCCAGGATGAGACTTGGGGGGGCAGCAATTTACAGTGGATatacctttatttagcttatgcgaagaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105314 lncRNA downstream 13083 36061790 ~ 36062537 (-) True G78743
TU105299 lncRNA downstream 91581 35982408 ~ 35984039 (-) True G78729
TU105300 lncRNA downstream 92692 35982408 ~ 35982928 (-) False G78729
TU105261 lncRNA downstream 253969 35821285 ~ 35821651 (-) False G78698
TU105750 lncRNA upstream 1710 36092202 ~ 36093639 (-) True G79030
TU105755 lncRNA upstream 18970 36109462 ~ 36141399 (-) True G79033
TU105761 lncRNA upstream 22403 36112895 ~ 36171303 (-) True G79039
TU105763 lncRNA upstream 28545 36119037 ~ 36119489 (-) True G79041
TU105766 lncRNA upstream 31971 36122463 ~ 36186239 (-) True G79043
XM_039804897.1 mRNA downstream 4517 36063562 ~ 36071103 (-) True kcnv1
XM_039804947.1 mRNA downstream 77849 35994652 ~ 35997771 (-) True LOC120561730
XM_039807236.1 mRNA downstream 125462 35946383 ~ 35950158 (-) True LOC120563120
XM_039807237.1 mRNA downstream 136642 35933034 ~ 35938978 (-) True LOC120563121
XM_039806166.1 mRNA downstream 233388 35835102 ~ 35842232 (-) True LOC120562453
XM_039807335.1 mRNA upstream 101838 36192330 ~ 36317708 (-) True LOC120563179
XM_039807336.1 mRNA upstream 101838 36192330 ~ 36317100 (-) False LOC120563179
XM_039807345.1 mRNA upstream 248589 36339081 ~ 36359575 (-) True creb3l4
XM_039806168.1 mRNA upstream 461952 36552444 ~ 36559464 (-) True LOC120562455
XM_039807342.1 mRNA upstream 629001 36719493 ~ 36731530 (-) True LOC120563186
TU105304 other downstream 49078 36024731 ~ 36026542 (-) True G78733
XR_005639861.1 other downstream 766223 35300967 ~ 35309397 (-) False plekhf2
TU104958 other downstream 898381 35173866 ~ 35177239 (-) True G78496
unassigned_transcript_360 other downstream 939459 35136090 ~ 35136161 (-) True trnap-cgg_2
unassigned_transcript_359 other downstream 940558 35134991 ~ 35135062 (-) True trnap-ugg_1
TU105756 other upstream 12505 36102997 ~ 36105675 (-) True G79034
TU105798 other upstream 258737 36349229 ~ 36359580 (-) False creb3l4
TU105799 other upstream 258737 36349229 ~ 36359580 (-) False creb3l4
TU105912 other upstream 574050 36664542 ~ 36748224 (-) False LOC120563186
TU105962 other upstream 1017491 37107983 ~ 37206266 (-) False LOC120562574

Expression Profile