RNA id: XM_039807192.1


Basic Information

Item Value
RNA id XM_039807192.1
length 2209
RNA type mRNA
GC content 0.48
exon number 9
gene id tsnare1
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 6636852 ~ 6805600 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGTCGCAACCCATTTGGAGGTCCTACGAGGCAGGGCTACCAGCCAGTAGacaCTTCATTCAGCAGCAAACCAACAAAGTCATCACCAGCACAAGCCAACTCATCAAACAGCTCTCTGATATAATCAGTGGCTCTTCACGGCAAGACCGTCTGCACCTGACCAGACTAAAGACTGAACTCTCAGAGTCTGTGCAGCGCTATGGGGATCTGCAGAAGAAAATTGCAGAGCGTTCAAGGGCCTTGCTCCCTCCAGCGCAAACAGACAAGAATAAGAGTCCTCAGACCCCATCCACTGAGCAGATGGAGGAGGGTCCACTGTTTGGAGAAGCAGTAGGCTCCGAGGGAGGGGCTCAGGCTTTCCTGTCAGAGATCAGTGAGGAGGACGTGGAGGCGCTTCGCCAAAGAGAGGAGGCCCTGCTACACATCGAAAGAGACATGCTGGACGTCAGTCAAATCATGAAGGATCTGGCCAGTATGGTCCATGAACAAGGCGACACCATagACAGCATTGAAGATTACATCCAGACTACATCATCCAACGTTGaatcagccaatcaggagcTTGCAAAAGCTAACCAATACCAGAGGCAGCTGAGGAAGAGGAAATGCTACCTGCTGGTGGCCGGAGGCATCGTTCTCATcgtcctcatcatcatcattgctGTTTCAGCGAGGAAATGAGACCGGCCACTGTGGTAGCTGCTGTCATTACCGTGTCACCGCAGCGCTCCAGCCCGGTCTGATCCCTGACCCGAGCAGCTGGTTTCCAGTAGGAGGGAGCTGCCCTGCAACAACGTCTCTACTCCATCATCCCTGCCTCTGTTTACAACTGCATCAGCCTGGGGACAGAGGCCTTTCTCAGCTTACCAATTTGTCCAGAGTCCCGGTCGGAGACTCTCATGTAAtcctttaatttatttatttttcgtTGCTGTTACTGTTAGTGTGTCTCATTTCGGATACTTCTGTGAGTGCACTTACATGTAGTGCACTGTGAACACTTGTAGAGTGCATACATTTCGACAGGGAAGCGttgtctcaaatcgcgcacaGCCGTTAAGCACTTACCGGAAattactcttcttcttcttcagtttagtctcacattgccagaccttcttccacagcgctgcggaggaaggtcagGCTAGTCAACACAGCATTCCGAGAtaagagaaaaacgtgctctgatttattagcatttctttaaaccaatcacaatcgtcttgggcggcgctaagcggcagacggagccacggtgcctctgcaaaatagcctcgggaaggaacttgttttggtggaacacattgaagagtttagaacgccaacacaaaggaagaggacgGTATCGGATGTCCGCCTGAAAATagtgacatctggcggaatatccggcggcaccggagcaatcgcagaagtggaacatcatggatatagactaatttaatgtttaattgcaGCCGGGTGGAGCTTTAGCGCCACCTTTTCTCATCCACCCAGCTTGTTTTCTCACTAACTGCAACAGTATAGTGGTACATATCGGAAAAACACGTGTATATTATGTATAGTTTGTGTTTCGCTGTTTCAATAACAACCGCTGCAGTATCCTCGCCCGCCACTTCCACAAGTTTAAAAACACGTTGGTAGTGCCGTAGCGTCCGCTCCGTAGCAAAGATGGCATCTGTTGAGCGCGAGTAGTGTCCAGCGATACACACTCAACATTTCTGCCGCTTTTGAGTGCAGCATCCGGGTACTGGCATGTGCACTGCATGTGGCCACACGTGTAAATGCAATATGTACTCAAAAAGAGCAAGTGCAAGTACAgaagtgcgcgatttgagactCAAATGTTATCATCAAAGCTGAAGTGACACATGTGAATTTAGGGATTACATCAGAGGCACACAGCTGGGTTGTTTCCTGTCTTGGCTGTCTCCTGTGGAGGGTTACTGTTGTATATGACAGACCTTCAGCTCCTAACTGTGCTGTTTTATCAGAAAACCCAGATGAAGGTGGAGCAGGAGTATTAGGGTGAGACAAGGCAGCTTCACTGCTGTACTGTATGCTCTGTATCTTTCATGTATTTGTACTGAAATTGATTGTTTATCAGCTtgtagtgttatttattcattaatatATTGTAGCGTTTGTTGGTAAATAttgtttgaccaaatacatcttCCAGAATAAAAGTCTTAAGTTcaacagcaa

Function

GO: NA

KEGG:

id description
K13814 TSNARE1; t-SNARE domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94952 lncRNA upstream 40906 6595383 ~ 6595946 (+) True G70965
TU94947 lncRNA upstream 48558 6587866 ~ 6588294 (+) True G70962
TU94891 lncRNA upstream 204725 6430535 ~ 6432127 (+) True LOC120562135
XR_005639700.1 lncRNA upstream 205288 6430541 ~ 6431564 (+) False LOC120562135
TU94877 lncRNA upstream 355146 6281333 ~ 6281706 (+) True G70934
TU94969 lncRNA downstream 39891 6845491 ~ 6845735 (+) True G70982
TU94970 lncRNA downstream 43550 6849150 ~ 6849410 (+) True G70983
TU94980 lncRNA downstream 55640 6861240 ~ 6861544 (+) True G70993
TU94983 lncRNA downstream 60009 6865609 ~ 6865945 (+) True G70996
TU94985 lncRNA downstream 65531 6871131 ~ 6871929 (+) True G70998
XM_039805194.1 mRNA upstream 822210 5812877 ~ 5814642 (+) True LOC120561876
XM_039805871.1 mRNA upstream 1041952 5591199 ~ 5594900 (+) True si:ch211-198c19.1
XM_039805872.1 mRNA upstream 1041952 5593041 ~ 5594900 (+) False si:ch211-198c19.1
XM_039805861.1 mRNA upstream 1238304 5336264 ~ 5398548 (+) False LOC120562244
XM_039806809.1 mRNA downstream 199004 7004604 ~ 7029761 (+) True LOC120562880
XM_039805595.1 mRNA downstream 233563 7039163 ~ 7292435 (+) True cdk14
XM_039805596.1 mRNA downstream 233563 7039163 ~ 7238814 (+) False cdk14
XM_039805598.1 mRNA downstream 280113 7085713 ~ 7292435 (+) False cdk14
XM_039805600.1 mRNA downstream 280408 7086008 ~ 7292435 (+) False cdk14
TU94835 other upstream 675998 5960455 ~ 5960854 (+) True G70894
XR_005639717.1 other upstream 1043803 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 1218931 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 1970746 4665784 ~ 4666106 (+) True G70654
unassigned_transcript_306 other upstream 2523571 4113209 ~ 4113281 (+) True trnar-ucg_13
TU95170 other downstream 925422 7731022 ~ 7801380 (+) True G71147
TU95377 other downstream 1316001 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 1477781 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 1477781 8283381 ~ 8309744 (+) False ano10a
TU95565 other downstream 1943343 8748943 ~ 8751443 (+) True G71470

Expression Profile