RNA id: XM_039807203.1


Basic Information

Item Value
RNA id XM_039807203.1
length 1305
RNA type mRNA
GC content 0.43
exon number 8
gene id sri
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35102976 ~ 35110676 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATTAGAGGTCATGTGGTCACTCACTGCAGCGCTGAGGAAACAGGCCGTTTAACAACAAACATCCCGAAGATTTCACATTTTTCTGCCTGTTTCCTGCCGGAGTCTGGTCGGGTCATTCCGTGATATACCTTCATTAAGACCAAGACCCGCCTCGGTGCTTCAGGCTCATTTACAAGACTTTATAATCTCATTTCCGccgttttttttccttcttgttACAGTAACTGCATGCAGACAGACACGCCTCTGAAGTTAAGGAGGTGTTAGCGCGGTGTAGCTTACATTTCGACTGGAATtccttattttattgttttttataatAGATTAAATAATGGCCTTTCAAGGATACGGTGCTGCCCCTGGTGGTGTCGCGCAGGATCCTCTCTACGGATATTTTTCAGCTGTTGCTGGACAGGATGGACAGATCTCAGCAGACGAGCTGCAGAGCTGCCTCACACACTCCGGCATCTCTGGCTCATACAAACCCTTCAGCCTGGAGACCTGCAGACTGATGATCAGCATGCTGGATAGGGACATGTCCAACAGCTTGGGCTTCGCTGAGTTCAAGGATCTGTGGCAGGTTCTGAATGGCTGGAAGATGACCTTTGCATCCTATGACCGGGACCGCAGTGGGACGGTGGAGGGCCAAGAGCTGCAGCATGCTGTCGCCTCCATGGGTTATAATCTGAGCCCTCAGGCCATGAACATCATCATGAAGCGCTTCAGTTCACATGGCAGAATCACCTTTGATGACTTTGTGAGCTGTTGCGTAAAACTCCGGGCGCTGACCGCTCAGTTCCAAAGAAGAGACACAACCCGAACTGGCAATGCCTCATTTCAGTATGATGATtttATCCAGGTCACCATGGCCATATGAAGAGGAAGACACACCAGTTTTTTAATATCTTATATTAACACCATGTACtttcactgtttattttttatttgtaatcatCGTTGTACAAGCACACTTACAATGTTGCTTTTACATTCCATTTTACATTGAACTGAATACTAATACATAATACTACAAACTAATAAGAATATAGTAACCTCAGGCTGCACCAATGAACCACTATGTGCCCATGTTAGCCCATAGCGTATATGagtgtaaacatgttttaaaatgaataaataaatatgtaatgtcACAAAGTGATGATTGGCACATATTGACTCCCTTTGAGAATAGCTGTCTTGTAGCGTGTTTGTTGGTTTTGTATTGTTGAACTCTTTGTAGACTTTCATTGTCTATTGCTTTCATTCCTGTTGTGCTAAATACAAACTTAACACATCACATCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104891 lncRNA downstream 13497 35089213 ~ 35089479 (-) True G78459
TU104863 lncRNA downstream 44106 35057968 ~ 35058870 (-) True G78452
TU104862 lncRNA downstream 48784 35053286 ~ 35054192 (-) True G78451
TU104861 lncRNA downstream 55835 35046927 ~ 35047141 (-) True G78450
TU104859 lncRNA downstream 72130 35030642 ~ 35030846 (-) True G78448
TU104951 lncRNA upstream 8792 35119467 ~ 35120376 (-) True G78491
TU104956 lncRNA upstream 14814 35125489 ~ 35128229 (-) True G78494
TU104968 lncRNA upstream 70685 35181360 ~ 35181929 (-) True G78506
TU104971 lncRNA upstream 75003 35185678 ~ 35186487 (-) True G78508
XR_005639880.1 lncRNA upstream 118002 35228677 ~ 35232021 (-) False LOC120562928
XM_039807372.1 mRNA downstream 14547 35072958 ~ 35088429 (-) False LOC120563201
XM_039807376.1 mRNA downstream 14560 35072959 ~ 35088416 (-) False LOC120563201
XM_039807373.1 mRNA downstream 14560 35072959 ~ 35088416 (-) False LOC120563201
XM_039807370.1 mRNA downstream 14560 35072959 ~ 35088416 (-) True LOC120563201
XM_039807371.1 mRNA downstream 14577 35072959 ~ 35088399 (-) False LOC120563201
XM_039806807.1 mRNA upstream 157682 35268357 ~ 35309397 (-) False plekhf2
XM_039806808.1 mRNA upstream 157682 35268357 ~ 35289635 (-) True plekhf2
XM_039806806.1 mRNA upstream 157682 35268357 ~ 35289396 (-) False plekhf2
XM_039807233.1 mRNA upstream 298647 35409322 ~ 35448298 (-) True ndufaf6
XM_039807234.1 mRNA upstream 298647 35409322 ~ 35448297 (-) False ndufaf6
TU104853 other downstream 88454 35012103 ~ 35014522 (-) True G78444
TU104838 other downstream 125015 34974824 ~ 34977961 (-) False bcan
TU104706 other downstream 609781 34492346 ~ 34493195 (-) True G78321
TU104595 other downstream 956680 34095643 ~ 34146296 (-) True G78245
unassigned_transcript_358 other upstream 22989 35133664 ~ 35133735 (-) True trnap-agg_6
unassigned_transcript_359 other upstream 24316 35134991 ~ 35135062 (-) True trnap-ugg_1
unassigned_transcript_360 other upstream 25415 35136090 ~ 35136161 (-) True trnap-cgg_2
TU104958 other upstream 63191 35173866 ~ 35177239 (-) True G78496
XR_005639861.1 other upstream 190292 35300967 ~ 35309397 (-) False plekhf2

Expression Profile