RNA id: XM_039807216.1


Basic Information

Item Value
RNA id XM_039807216.1
length 1462
RNA type mRNA
GC content 0.51
exon number 7
gene id ntd5
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23108781 ~ 23117768 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cCTCCCATTCTTTGTTCCCCTTTCCTTAAAAatgctgtgtctttgtgtccctCCCTCATATCGTCTGAGACCTGACTTCAAGGATGGACTgtgcactgctgctgctgtccctgtGGGCTCTGACTGGAACGGTGTCCCCGCAGGCTCCAGGGTCATGTACGGAGAGACTtctgggagaggagaggagcaggacgTGTCCTCGGCCCTGCAAAGCTGACAGAGACTGTGGCAACAAGCGCCAGTGTCTGTGTGACGGCCAGTGTGGTCTCAGCTGTGTGGCTCCAGAGGCTCAGTCACCTGAAGAACCTGCTGCCGTCCAAACCTGCCCTCTGCCTGAGGAGATCATCAACACCTTCAGCATCCAGGGCGACGCAACAGCAGGAACTGCCATCCGCTACAGCTGCCTGTCTGGGGCGGATATAGTGGGGAACAGTGAGAATTTCTGCCAGGATAATCAGACCTGGCAGTATCCTCACCCCATCTGTAAAAaaGCGTATTGCCAGCCTCCTGGAGAGGTGGCGCAGGGATACGTGGTGGCTGTCCAAAAGACTGAATATGAAGTTGGCTTTGACATCCACTAcctttgtaaaaaaaacttcCTGCTGGATGGACCCCAGAAGGTCACCTGCCTGTCTAATGGCAACTGGAGTGCATCGCCCCCATACTGCAGAGCCCGCTGTCTCATCCCTGCCGAGCGAAGCCGTGTGGTGATTGGTGGAGTGAAGCGCTGGCCGTTTGATGTCACAGACGCCGTGGTTCCTCACGGGGAAAATGTGACGTTCTACTGCAAACACCCTCGCAAGCAGTGCAGCTTCGCTGCATCCAAGACCTGCTTTGATGGAAAGCTGCAGCCACCAGCCTGCTACCTTGAGCCCACGTGGTTGCAGTATAAACTCTTCCCTCACCGACTGGTCTCAGAGATTGAAGCATGTGAGCCTGATGATGTGGAGTGATGACCTCCTCGACCCACCCAACACCCATGACACTGTGTTACAATAGGAACACCTCCTGACACACACCATCGCCCAGAGCAGTCCCTCTCCACTCTGCAGCTTTGCTTAAACTATCTATGCTATGATTGTGATTGTCTGTTTTACACgctgaaatatttttttcacagcTCTTGTGGATCCTGAGCTTGTGGCCTTTGTCCCTCTCTGTGGCATACTTTCAAACTGTGGGCGTAATTATAATCTGCAAAGCCCTCAAGTATTACTTTGATCTTCTTTCAGCTTGAGCCAATGCATACTGTAGATGAAATGCATATGAGGATGTCCATATGATGCATTGATACATGCTATATCAGTTATGCATGTAAAGATACCTCCATGTAGCCTAACTCATAATAGCTTGACTCTGTGATATCTCACTGTGTGATCTGTCTCCCCTCCCTTAACCCTGACGCATCAAGTCTTGAGGCTTGTAAGATTTAATGATGTGAAATAAAGTtatgtcaaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100360 lncRNA upstream 25642 23079812 ~ 23083139 (+) False LOC120562293
TU100419 lncRNA upstream 90186 23016807 ~ 23018595 (+) True G75077
TU100410 lncRNA upstream 114075 22994420 ~ 22994706 (+) True G75069
TU100406 lncRNA upstream 121459 22982892 ~ 22987322 (+) True G75065
TU100379 lncRNA upstream 183626 22924592 ~ 22925155 (+) True G75045
TU100533 lncRNA downstream 26174 23143942 ~ 23144165 (+) True G75155
TU100574 lncRNA downstream 210474 23328242 ~ 23328629 (+) True G75192
XR_005639637.1 lncRNA downstream 214072 23331840 ~ 23332756 (+) True LOC120561704
TU100579 lncRNA downstream 222078 23339846 ~ 23342677 (+) False G75196
TU100578 lncRNA downstream 222324 23340092 ~ 23342677 (+) True G75196
XM_039805957.1 mRNA upstream 714 23099289 ~ 23108067 (+) True dbpb
XM_039805955.1 mRNA upstream 12336 23087175 ~ 23096445 (+) True si:dkeyp-69b9.6
XM_039805956.1 mRNA upstream 12336 23087175 ~ 23096445 (+) False si:dkeyp-69b9.6
XM_039805953.1 mRNA upstream 25634 23070587 ~ 23083147 (+) True LOC120562293
XM_039805952.1 mRNA upstream 25634 23070587 ~ 23083147 (+) False LOC120562293
XM_039807223.1 mRNA downstream 161 23117929 ~ 23123313 (+) False LOC120563112
XM_039807222.1 mRNA downstream 330 23118098 ~ 23123313 (+) True LOC120563112
XM_039807224.1 mRNA downstream 330 23118098 ~ 23123313 (+) False LOC120563112
XM_039806067.1 mRNA downstream 11326 23129094 ~ 23141752 (+) True si:dkeyp-69b9.3
XM_039806475.1 mRNA downstream 88180 23205948 ~ 23256664 (+) True LOC120562649
TU100365 other upstream 206733 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 288728 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 441237 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 485697 22616972 ~ 22623084 (+) False arnt
TU100710 other downstream 373357 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 646547 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 649417 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 650465 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 756148 23873916 ~ 23879415 (+) False LOC120563047

Expression Profile