RNA id: XM_039807255.1


Basic Information

Item Value
RNA id XM_039807255.1
length 2114
RNA type mRNA
GC content 0.46
exon number 5
gene id rspo2
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 10662478 ~ 10729121 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCAGTTTCGACTCTTCTCATTTGCCCTGGTCGTATTGAACTGTATGGAGTACAGCAGCTGTCAGGCGCCGTCGCACCGCTGGAGGAGAAACAAAAGAGCTAGCTATGGAGCGTACCCCATCTGTAAAGGCTGCTCGGTGTGCTCCAGGGACAACGGCTGTGTGAACTGCCAGCCCAAACTCTTCCTGTTTTTGCggagagagaggatgaggcAGTATGGGGAGTGTCTTCACGACTGTCCAGCCGGATACTACGGCATGCGCAGCCCTGAACTCAACATGTGCTCCAGGTGCAGGATAGAGAACTGTGAGTCCTGCTTCAGCAAAGACTTCTGCACCAAGTGCAAGTCTGGCTTTTACCTACACAAAGGGCGCTGCTTTGATAAGTGCCCCGAGGGCTTCGCCCCGCTGGAGGAAACCATGGAGTGCGGAGAGGGCTGTGAGGTGGGCCAGTGGAGCGAATGGGGAGCCTGCACCAGGAGAAACAAAACCTGTGGCTATAAGTGGGGTCTGGAGACCCGGACGCGGCATATTGTAAAGAAACCACCCAAGGACACAATACCCTGTCCCACCATCGCTGAGTCCAGGATGTGCAAAATGGCCATGAGGCACTGCAGGAGAGaTGGCTCAGGGAAGCAGCGACCCAAAGAaccaaagaagaagaacaagcaGAGGCTGCGGTTTCGGGCCCAGAACCAGCACAGCGACCACTTGGCCTCCGCGCGCTCCAGCCAGTGAGGACTTAAAAACTCGAAACTAGACTTCCCATTGAACAAAGAAACCAACGCCAACGCTGCTAGCCGCTGCTGCACCCATATTCtgaccccctcccccacccccgtGCTCTCACCGGGATACACAACCATAACTCACAAGTCCGTCACTACAAATATATATGTCTAACGTACGGTATCAGTATCAACACACTAAACACATGCTTCATGCCTCCCGCTGcttccctccccccaccccccccagctGCAGTAACCAGCCAGGTGACTCTCAGCCCCAccccttgccttgccttgccttgtggACCTTTACAGTTGACATTACCAAACTCATTTCCTGTCATTAACAATGCCATTAACCGTGCAGAGAGTGATGGAAGACGCAGGGGCGACCAGAGACTGTGGAGGCGGGAGAGGCGGATAGGAGAGGTAGCGAGGGAGTTGGCAAGCTAAACTGCTCGTAgaagggggtggtggtggtggggggtgggaTCAGACCAGGGAGgatgttaaaaaaagagagcagaTGAAGCGACAATAGAGATTCGACTGAAGCGAATGATGCTGATGGACAAGAAAAGGGCATCTGGAACTGAAagagacagtttttttttttttgttcctatATTTATGTTAAAACTACCCTCACCTTCCCCCTCTAAATGGAGACGGAGCGTTCCCATGTGTGGCCTTTATGTTATGTACATTTTTGAGAGTAATATTAAAGAAATTACCATGCGTAGTTGCAAAGTATTTTATTCTCAGCACAAACTGTTTACGTTCAAACCGCTTTTATGCTCTAACTGTATAGTGtggatataaaaaaagaagaaatttaGTTGTTTGACAAGCATGGCAACAGACTCATGTGTACATAGTTTATCGAATTATGAAAGCTTATTACTGTATTTTCAGTATTGACTTGTTCACCATTCTAAATGTTTTAGAGATTAAACGGTTGTAATACCAAGCTACagattaaaatgattaaaaacaaataataaacataGCCGCCACATAGCTGTTTCATTTATATGGtatatatttgatttatttattaattctattttgtactttttttgttCAGTGAGAACGTTTGCCTCATACTGTTAACTCTTATATGCTGAAATATTCTTTGAGGTCCTTATAACAGTGCATATCTTTAACACGTGGAAAAGGTTTTTGTTCTGATGTCATGCAAAGTCTTGTATTACATTCATTTGACCTCATCTACTGATTTCAATGTTTTCAAGAAGaagcaaaaaagacaaaactatGCTTTGACATATTCTAGGTTTAATGATTAGGATCCAGCAAATGTATGGTCATAGGACTGCATATGTGTACATTGTGttttattaaaatacatttcatgtGACTGTA

Function

GO: NA

KEGG:

id description
K23097 RSPO2; R-spondin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95887 lncRNA upstream 44897 10618257 ~ 10618575 (+) True G71738
TU95864 lncRNA upstream 72066 10580160 ~ 10591406 (+) True G71723
TU95866 lncRNA upstream 74410 10580160 ~ 10589062 (+) False G71723
TU95729 lncRNA upstream 460881 10201676 ~ 10202591 (+) True G71609
TU95728 lncRNA upstream 461333 10201676 ~ 10202139 (+) False G71609
TU95891 lncRNA downstream 14890 10744011 ~ 10744271 (+) True G71741
TU95873 lncRNA downstream 16887 10746008 ~ 10751849 (+) False LOC120561920
TU95874 lncRNA downstream 16887 10746008 ~ 10751849 (+) False LOC120561920
TU95875 lncRNA downstream 16887 10746008 ~ 10751849 (+) False LOC120561920
TU95876 lncRNA downstream 16887 10746008 ~ 10751849 (+) False LOC120561920
XM_039805508.1 mRNA upstream 6676 10621192 ~ 10656796 (+) True eif3ea
XM_039804822.1 mRNA upstream 144481 10516857 ~ 10518991 (+) True LOC120561655
XM_039806357.1 mRNA upstream 284718 10368865 ~ 10378754 (+) True LOC120562578
XM_039806375.1 mRNA upstream 305695 10328164 ~ 10357777 (+) True LOC120562586
XM_039805262.1 mRNA downstream 17230 10746351 ~ 10751191 (+) False LOC120561920
XM_039806326.1 mRNA downstream 56560 10785681 ~ 10961130 (+) False LOC120562569
XM_039806327.1 mRNA downstream 56560 10785681 ~ 10961130 (+) False LOC120562569
XM_039806330.1 mRNA downstream 56560 10785681 ~ 10961130 (+) False LOC120562569
XM_039806328.1 mRNA downstream 56560 10785681 ~ 10961130 (+) False LOC120562569
TU95730 other upstream 455275 10207415 ~ 10208197 (+) True G71610
unassigned_transcript_348 other upstream 1813752 8849632 ~ 8849720 (+) True trnay-gua_42
unassigned_transcript_347 other upstream 1814135 8849249 ~ 8849337 (+) True trnay-gua_41
unassigned_transcript_346 other upstream 1814901 8848483 ~ 8848571 (+) True trnay-gua_40
unassigned_transcript_345 other upstream 1815991 8847392 ~ 8847481 (+) True trnay-gua_39
TU95885 other downstream 56533 10785654 ~ 10867832 (+) False LOC120562569
TU95893 other downstream 91174 10820295 ~ 10821417 (+) True G71743
TU95894 other downstream 91174 10820295 ~ 10821500 (+) False G71743
TU96068 other downstream 869916 11599037 ~ 11616242 (+) True G71896
TU96069 other downstream 869916 11599037 ~ 11616242 (+) False G71896

Expression Profile