RNA id: XM_039807261.1


Basic Information

Item Value
RNA id XM_039807261.1
length 4264
RNA type mRNA
GC content 0.43
exon number 6
gene id cacng7b
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23289137 ~ 23302025 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacTTATTTCCCTCCTGCTCCTGCTATGTCTCTGTTGTAGCCAAAGTAGCTTGCTGGACCAATCCACCGCAGTGCCTGGGACAGattgagtgaaagagagagtgagggatTTAGAGAAAGGGTAAGGGGGCCTAAGGGAAAACACATagaagcgagagagagagaagaagagagaccaAAAATCCACCAAGCCTCCCTGGTGTGAGGTTTCTTGGCTACTGACGTGTGCGCACGACTCTCGTGGCAGgATGAGTTCGTGCAGTAGCCGTGCATTGACCATCCTGTCCACAGTGTTCGGAGCCTGCGGGCTGCTGCTGGTGGGGGTGGCCGTGTCCACAGACTACTGGTTGATCATGGTGGAGGGCATCATcctgcagcagaaccagagcaTGGAGGTGAAGATGGCGCTGCATTCAGGCCTCTGGAGAGTTTGCTTCGTGGCCGGAGCAGAGAACGGGAGATGTGTTGCGTCTGAGTACTTCACTGAACCAGATATCGAGATCACCACTGAAAACACTGCAAATATCCTCAAGATGGTGCGGACGGCCACGCCCTTCCCGATGGTGTCACTGCTCTTCGTCTTCACGGCATTCGTCATCAGTAACATCGGACACATCCGGCCTGAGCGCACCATCCTGGCCTTTGTGTCTGGCatcttcttcatcctctcagGCCTCAGTCTGGTGGTGGGCTTGGTGCTCTACATCTCCAGTATTAATGATGAGGTGATGAACCGGCCCAGGGAGCCCGAGCAGTTCTTCAACTACCACTATGGCTGGTCCTTCGCCTTCGCTGCCTCTTCCTTCTTACTCAAAGAGGGGGCCGGGGTGATGTCAGTCTATCTGTTTATGAAGCGCTACGCAGAGGAAGAGATGTTCCGCCCCCACCCTGCACTCTACCGCCCCCGCCTGTCCGAGGGCAGCGACTACAGCGGTCAGTTCCTCCACCCAGAATCCTCCTGGCCTCCGCCGAAGCGAGGCCGCAGCACCTCCAATGCTTCCAGCGACATCTCCATTCAGCTCAACCAGGCACCCCCAGCGCCGCCCAAAAGCAGTCTCCAAGGCCAGGGTGGCCCGCCTTCTGGGTCTTCTTCCGCAGGGAGCTACCAAATGCCCCCACAGTCTGCTGGCtacccctccacacacaccctcaccagGTCGCACTCCTCACATCCCCAAGGCCAGGCTCTTCCCATGGCCATGCCTCCATCGCCTGTACCTCCCCctcactatcacacacacatgcacatgagcGCCTCCCCCTGTTAGGAAGATGGAGCATTGGGGAGAGTTGGAGAGACGCAGACTCCTCATAAtcacatatactgtactattAGATGTGGATAAGAGTAAATGCTGAGCTTGGAGCACAGATCATGTAAGATGAAGTGAAGGGAGAGGTGATCAAACATAATGAAATGTAGATTTGGAACAATATGAACCAAGGACAAAGAAGTGTTGGAGATTGAAAGTAAAGATTTTACAGGATTGTGGAGATTTGACAGAAACTGTGACGGACAGACGGACAAAAATTAAGACAGGAGATgagtggaaaagaaaaagatgaattttgtcattttgtcatGATGGAAAGAGGCAAAAAAAGGGGTTCCTAGAAAGCCTTTAGAGGTTAGGTTGAGTGACAGAGGAGATATAGGGGAGGGAGAGTGAGGCAGGGAGAGCGAGGGGCTGCGGTAATATACGAAGATGCTgcagtgctgcaggaaatttgTATGCACTAGGAAATGTACAATGCAAAACACTGATCACAAAGACTGAGGATGCACATAGTTTTATACATACgtaattcataaaaaaacatggattaTGTACTATTATACCGAAAGGTaaatgtggtaaaaaaaaagttatctgAATTTCTTACATCATCAATCCAGTTTCTTAACGCACAATGTCAAAgtagtattattaatattattaataacaaaAGCATTAGTTTAACAATAGAGTACATCTGAAATGAGAACACTATATGTGAATGTTGTTAatctttgtaaaaaataaaatacagacagaagtggatGATGTGAGAAGGAGAAATCTACTTTGTTTTACATAATTGTTTAAGATACACATTTCTAAACTTCTTGTACATAAAATTGCACATGAGGACATCTAATATATAGCTGTTGTAAATAATGAATGAAGCTTTGGCACAAGTCACATCAAGAAAATGTCTGACTCATTCTGCTTTGGATGAAGACTCTGCAACAGGCGCACTACAACCAACAACACACCCTCTGGATGCGGATGCAGCGCACGCTGGTTTGAAGGAGGAACCATCCGACACTGATACAGCAGTCTGATGCCCTCTACTGGCCATTGTTCTGCACTGACCCTGGATCAGATCAGAGGCCCAGGTCACTACTTGTTCATGCACATTTCCTTCCTCAATGACCTGCACTGTGTCAGTTGATAGTGCTGCACAGAGTTGGACTGAAGCTGTTATGGTGAATGTCAGGAGCAAAGCGACATGCCATATTGAGCTGCACTAGATTTATGCTTTAAAGACTGGTTAGAAGtattttttaaaagctttaaTGCTGGTTATATATCTGGAAAACTTACATGATGAAAGTATTAATTACATTTGCACTTATACTGCTCAAAGGAAAATACCACTGTTTGTGAAACACAGATCCATATTATATAGACAAAGTAGTGGCCGCTGCTTTATTCCAATATTTTCAGTGGCAATTTGTGACCATGCATCATGCCAAAGGATGATGAGTATAATATaatgcaactaatgattattttcattatcggtaaatctgttgattttgtttttctatttattgtctatgaaatgtcagaaaatagtgaaaaatgctaaatataatGTCCCACAGCTCAAGGTGATGTatttaaattgctttttttttttatttgaccaaTAGTCCAAAACTAAAAGTTTTCTACCATTACATGACAAAATTCTCCAGCAAGTGTTTGACATTTTGCTTGGAAAATTACAAAATCATTAatctattatcaaaatagtgCAGAATCATTTTTCTTGATGGATTAATTGATTATTCAGGTATTGGAATTTTCAGACGATCCCCAATGGGTCAGCACTTATAGGACATTGTAGGACGTTTTAGCCTACTTTGCTTTGCACTTGAAACAAATACGGTTatattgtgtttgttgttgtactAAGTAATGTATTTTCAGATGCTTTCGAACTTTGATGCTCAGATCAAGTTGCTCTTTAAATACTGTGCAGTATCTCAAAGATGCAGAGTAGTAATCTTAAATAGACGAGCAGGACCTGTGTATCAAAAACAGTCGTATTTTAATTTAgaatagtttattttatttgtttttaaggcacATCATGAATATGTCGATACGATATATCTCTGCAATGAGAATTAAACCACTGTGTCATTGTGTAATGGCTGGTTTTCATTATCACTGTGATGCTGGAGATAGGGAAACACACTGATGTCCCACAGAAGATGTGTTAGATGAAAATCTCACAGATTTATGGGGGAGAATATGAAGTGAGATCAAAATATCATCGTATTTTCACCTTTATGAAGGGTTTTGTTGAGCAAGCGCGTGGCTCTTTAAAACCGCCCTGCTTTTTGTTTATGCAGTCGGACAAATTCATGTTGAGGTAAAGCCCAGTGTAACTGCAGCCTTCTGCTGTTGGCTCTGCTTTTTACAGTTAGaaggttaagtgccttgctcaagggcacctcagcagTAGCTGTTGAAGAAGTTCAAAGTATTTCCCTTTCTAAACCTTCCTGTTAAAATCTCCTCTCCAATCTTCAGACTGCTAACCCCCATCATGACCTTTGTGACAGTGGACAGCTGTTCTGTTTCTCCCTTTGCATCactaatttccatttttattcaTAGAACCATCTGATAATCATTCGGTGcctcttattttctttttcatctgtGTACCTCTTTGTGTTTCCCTTTGTACTACCCCATCTTTTTTCTTTGCCTCTACATGATTACATAAAAGGGTGTAGCTGTGTTTTCTTCTGCATAAAGCCTGGACTCCTAGCACATGACCATCtttgtaaagaaaaagaaatgggtAAAACAAATGCTTTTCAATGCTTCAATGGAACTGATGCTATATAATCTTGAGTTACATAATTCAATAGCAGTTATGATAAAAATCATTGTTTTTGAAAGTGTTGACATAGTCACTCACTTTCCTCTTAACATGAATAAAATTTTCAACATGGGTAAATTTCACCCTGTTCAACCTC

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04872 CACNG7; voltage-dependent calcium channel gamma-7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100533 lncRNA upstream 144972 23143942 ~ 23144165 (+) True G75155
TU100360 lncRNA upstream 205998 23079812 ~ 23083139 (+) False LOC120562293
TU100419 lncRNA upstream 270542 23016807 ~ 23018595 (+) True G75077
TU100410 lncRNA upstream 294431 22994420 ~ 22994706 (+) True G75069
TU100406 lncRNA upstream 301815 22982892 ~ 22987322 (+) True G75065
TU100574 lncRNA downstream 26217 23328242 ~ 23328629 (+) True G75192
XR_005639637.1 lncRNA downstream 29815 23331840 ~ 23332756 (+) True LOC120561704
TU100579 lncRNA downstream 37821 23339846 ~ 23342677 (+) False G75196
TU100578 lncRNA downstream 38067 23340092 ~ 23342677 (+) True G75196
TU100582 lncRNA downstream 44815 23346840 ~ 23350767 (+) True G75197
XM_039806978.1 mRNA upstream 2185 23269123 ~ 23286952 (+) True prkcg
XM_039806977.1 mRNA upstream 2185 23269124 ~ 23286952 (+) False prkcg
XM_039806979.1 mRNA upstream 2185 23270791 ~ 23286952 (+) False prkcg
XM_039806475.1 mRNA upstream 32473 23205948 ~ 23256664 (+) True LOC120562649
XM_039806476.1 mRNA upstream 32473 23205948 ~ 23256664 (+) False LOC120562649
XM_039806973.1 mRNA downstream 2287 23304312 ~ 23322761 (+) True cacng8b
XM_039806976.1 mRNA downstream 2287 23304312 ~ 23322761 (+) False cacng8b
XM_039806972.1 mRNA downstream 2287 23304312 ~ 23322761 (+) False cacng8b
XM_039806975.1 mRNA downstream 2287 23304312 ~ 23322761 (+) False cacng8b
XM_039806974.1 mRNA downstream 4269 23306294 ~ 23322761 (+) False cacng8b
TU100365 other upstream 387089 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 469084 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 621593 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 666053 22616972 ~ 22623084 (+) False arnt
TU100710 other downstream 189100 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 462290 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 465160 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 466208 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 571891 23873916 ~ 23879415 (+) False LOC120563047

Expression Profile