RNA id: XM_039807291.1


Basic Information

Item Value
RNA id XM_039807291.1
length 1457
RNA type mRNA
GC content 0.39
exon number 8
gene id LOC120563155
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19278315 ~ 19280622 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAAAAGGTGATAAGACAATGATATGTTGTCACTCCACTCAGCTACATACTCAGAAAATGGCACATTTTTATTCACAGGGTCTCCTACTAATAGTCCTGCCAATAGTCATATCAGAGTGCAGAGGGATTGAGACTGTGAATGCTTCTCCAGAAGAAGATGTAGTTCTCCCTTGTTTTAATGTATCTGTGATGGATCCAAAGAGCTGCTACAGAGTCCAATTGATTAAGTACACCACAAACACCAGTCAGGTGAAGGTTATTCTTGCCAGGCCTAAAACACACAATTTGCAGGATGCTAAGCGTGTAAAATGGCAAGCTAATGGAAATGGACAAATGTCTCTTTATCtgacaaaattacaaaaatctGATGAGGGACTGTACAGATGTGAAATCTGGCAAGGCTGGGACTCAGTTTCTGTCAAAAACAtatctttaaaagtaaaagACTGTAAAACCCTTCAAACAATGAAGGCAGCACCCAGCACACCTGTTAACCTGAACTGCCCAGTGGACACAACATCAGGACAAGGACCCCAAAATATCTCCTGGGCAATAGTGAAAGGAGGCATCCCTGTATCTGTCAACTCAAAAAGGATTGTAATTGATGGGACATCATTAGTTATCCAGTCTGTTAATTACCATGACAGTAATTGGTACAGATGTGAATATGTGCTTGGACAAACTCTGCGCTGCTTTGAAATTAATCTTCGGGTCCAAGTGGAAAATGTTGTTGTCACCACAACGGATCCAGCACTGACAACCAGTGAGGAAATTATTTCGGAAACCAGGAAGGAGGGGAGCAATGGAGCAGTTATTGCTGTTGTAGCTTCAATCGTCATTGGGATTGTCATAATGGCTGCACTGATAGGACTGTTCATTTACCGCAGACGCAACACCCATAGAATTACACAGCAAACCCAGAGGCACCCAGCAGGTACTTTTGATGGTTATGAGATTGTGACTCTTACACCTTCAGAGGACCGTACAAACCAGCGAGTCAACAGCATATACCAACATATCGCTGATGAAGACCTGTGTACTTTCCGGTATTAGTTATTTTCAGTCTGCTCAAGACAAAGAAGATTTTCCATTAAAGTCTTTACTGTCTAATATGTATCGCTGGCTTACATAATCCATGTAACATTTACTCGCCTCTAAAGTATTTGTCTTGCAAAGTAAGTAAGAACATGGAAAATGTGTACAGTAGTGCAACATGGAAAacgtttaaaatataaaaacacaatgagTGCGTAGCAACAcaccaaaaggaaaaacaatatcTATGAAGTGTtacaattttaattttaaaaacatacCAAACATGTTTAACATTTTGCACCAAACAACCCACTGTTAACCTGTTTGTGTTAATATATCCAATCATCTCTTTTATTTGAAATGACATGGAGACGTGTTTACCATGTAATCTTTCAATAAAATCTTTTATACAATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98390 lncRNA upstream 1799 19272727 ~ 19276516 (+) True G73586
TU98350 lncRNA upstream 86696 19190020 ~ 19191619 (+) False hcst
XR_005639802.1 lncRNA upstream 115511 19159464 ~ 19162804 (+) True LOC120562631
XR_005639801.1 lncRNA upstream 115511 19160821 ~ 19162804 (+) False LOC120562631
TU98344 lncRNA upstream 115527 19159781 ~ 19162788 (+) False LOC120562631
TU98410 lncRNA downstream 38816 19319438 ~ 19320048 (+) True G73606
TU98557 lncRNA downstream 171161 19451783 ~ 19452180 (+) False si:ch211-254p10.2
XR_005639814.1 lncRNA downstream 173147 19453769 ~ 19456616 (+) True LOC120562732
XR_005639810.1 lncRNA downstream 333881 19614503 ~ 19625611 (+) True LOC120562701
TU98640 lncRNA downstream 354251 19634873 ~ 19639459 (+) True G73776
XM_039806924.1 mRNA upstream 8546 19245358 ~ 19269769 (+) True LOC120562959
XM_039806925.1 mRNA upstream 8546 19245358 ~ 19269769 (+) False LOC120562959
XM_039806932.1 mRNA upstream 8546 19247004 ~ 19269769 (+) False LOC120562959
XM_039806926.1 mRNA upstream 8546 19247004 ~ 19269769 (+) False LOC120562959
XM_039806928.1 mRNA upstream 8546 19247004 ~ 19269769 (+) False LOC120562959
XM_039805004.1 mRNA downstream 48328 19328950 ~ 19339714 (+) True rxrbb
XM_039805006.1 mRNA downstream 48328 19328950 ~ 19339714 (+) False rxrbb
XM_039805005.1 mRNA downstream 48602 19329224 ~ 19339714 (+) False rxrbb
XM_039804704.1 mRNA downstream 154068 19434690 ~ 19440233 (+) True slc6a19b
XM_039804777.1 mRNA downstream 160215 19440837 ~ 19446117 (+) True LOC120561621
TU98340 other upstream 119320 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 119320 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 531640 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 624678 18652411 ~ 18653637 (+) False LOC120562819
TU98016 other upstream 641008 18635436 ~ 18637307 (+) False LOC120562796
TU98645 other downstream 366353 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 1727411 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2122505 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 2318433 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 2488926 21769548 ~ 21770286 (+) True G74633

Expression Profile