RNA id: XM_039807293.1


Basic Information

Item Value
RNA id XM_039807293.1
length 1222
RNA type mRNA
GC content 0.54
exon number 6
gene id hapln2
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34952052 ~ 34964798 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATGGCAGCTGAACATTCAGGGCTCCGACAGAGGAGCCAACAGGGATGAACAGTTGCTTCCACTTTCCAAAGTTAGGAATAACCCAGGAATTCTTTGAAGGCATCGTCGTCATGTTGCACAACGGAGGAGGATGAGGGAACATCTGCGTCTTTTCAACTTCACAGGAGCTGGAGGAGTGACTCCCTTCATAATGAACTGTGCTGTGATTCTTCTATTAACATCGAGCTGCTTCACCTGGTCCTCAGCTATATATACCCCCAACAGGGCAGCACCCAAGAAGCTGAAGTACCTCCTGGAGCCGCCTGTTTACGCCGAGGTGGTTGCCCGAAGGGGAGAAAACGCCACCTTGCCGTGTATCCTGAGAACCAAACCCAGCCATTACAAAGTGAAATGGACCAAGCTGGAGTCAGAACACATAGGTCGGGAGAACATTATCATGATATCAAACGCACATGCCTTCAAGCCATACGGCCATCTTGGGCCGCGGGCTTCTCTTCGGAAGGCTCACACCATGGACGCCTCCCTGCAGCTCAGCCGCCTTGAGCTGGAAGATGGCGGCACGTACCGCTGCGAGCTCGTCAACGGCATCGAGGATGAGAGTGTTGCCATTACTTTGAGGATTGAAGGAGTGGTGTTTCCGTATCAGAGTAAAAATGGCCGCTACAAATTCACTTTCCATGAGGCTAAGGAGGTTTGTGCTGAGCAAGACGGCACATTAGCCTCATACATCCAGCTGTTCAGAGCATGTCTCCTCCCGCAGCGTGGACGGAGGGTCTGGACTGGTGCAATGCCGGTTGGCTCCGTGATGGGACCGTTCATTACCCCATTATTCATCCGCGGCCGGCCTGTGGAGGTGACCTGCTCCCCGGCATCCGCAGTTATGGGCCGAAGGATAAAATCAACGATCGGTTTGACGCTTTCTGCTTCACCTCGCAGACATCTGGCTCTGTCTCCTACATATCAGGCTCTTTCTCCTTCGAGCAGGCAGAACACGCATGCCAACGTCGGGGAGCTGAGTTGGCGTCGGTCGGCCAACTTTACTCTGCCTGGCGATTCCAAAACTACGACCAGTGTGACGGCGGATGGCTGAAGGACGGCAGCGTACGGTTTCCCATCAGCAAGCCCAGGGAGCACTGTGGGGGCATCCCGGAACCAGGGGTGCGCTCATTTGGATTCCTCAACAAGACGATGCATCTGTACGGCGCCTTTTGCTATAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104755 lncRNA upstream 33983 34914357 ~ 34918069 (+) True G78366
TU104754 lncRNA upstream 95520 34844239 ~ 34856532 (+) True LOC120562567
XR_005639791.1 lncRNA upstream 95527 34839160 ~ 34856525 (+) False LOC120562567
TU104847 lncRNA downstream 67052 35030908 ~ 35031135 (+) True G78440
TU104947 lncRNA downstream 205056 35168912 ~ 35173203 (+) True G78488
TU104979 lncRNA downstream 243075 35206931 ~ 35207166 (+) True G78516
TU104981 lncRNA downstream 266595 35230451 ~ 35230899 (+) True G78518
TU104982 lncRNA downstream 268290 35232146 ~ 35232446 (+) True G78519
XM_039804954.1 mRNA upstream 329469 34609910 ~ 34622583 (+) True nes
XM_039804950.1 mRNA upstream 510959 34419907 ~ 34441093 (+) True LOC120561733
XM_039804952.1 mRNA upstream 510959 34419907 ~ 34441093 (+) False LOC120561733
XM_039804951.1 mRNA upstream 510959 34420808 ~ 34441093 (+) False LOC120561733
XM_039806542.1 mRNA upstream 863306 34084095 ~ 34088746 (+) True LOC120562692
XM_039807365.1 mRNA downstream 79365 35043221 ~ 35058363 (+) True rrnad1
XM_039807366.1 mRNA downstream 81446 35045302 ~ 35058363 (+) False rrnad1
XM_039807369.1 mRNA downstream 95603 35059459 ~ 35071390 (+) True LOC120563199
XM_039806534.1 mRNA downstream 155577 35119433 ~ 35127711 (+) True snrnp48
XM_039806533.1 mRNA downstream 165258 35129114 ~ 35168180 (+) True zgc:113232
TU104752 other upstream 95520 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 407673 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 916085 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 1047789 33894372 ~ 33904263 (+) False LOC120562157
TU104301 other upstream 1090940 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_361 other downstream 224262 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 441519 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 901986 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 1173903 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 1330131 36293987 ~ 36350995 (+) True G78772

Expression Profile