RNA id: XM_039807301.1


Basic Information

Item Value
RNA id XM_039807301.1
length 3323
RNA type mRNA
GC content 0.43
exon number 11
gene id cers2b
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22589127 ~ 22606928 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcctccctctgtctgctcctctccctctctgctctcGTACCGGCCCTTCCTCCGCCTCTGCCCGGCCACAGACCCCGCCGACTCTCGGGGACACACTAGTGAGGAATTGTTTTTAGCTCGGACACGACGAGAttaagagagagatagagagagaagaaaaatatCGGGTCGCATTGCAGAATCTCGCACATTCTCCAATCTGtagacactttttttgttttttaatttatgttttaattaaGAGGAAAAATAAACTTTGTACGCCATGGAAATATGTAAAAATCATTCCGGATACTAAACTTGGACACAAACTGCGCCTTCTGAGCACAACCAGCGGGCTGGCAGACACTCAACAGGACCGTTAGGttattgctagctagctaggtgggACCTGGACGGCTTgtggaaaaaacattttttttatataattgcaAGCCGGATATCACTTTTCACTACGGGGGAAAACACCAAAGATGCTGTCTGGGCTGAGCGAGTGGTTCTGGCAGGAGCGGCTGTGGTTTCCAGAGGGCCTGGGCTGGGCTGACCTGGAGGATCGGGATGGACGAGTATACGCCAAAGCCCACGACTTGTGGGTGGCGCTGCCCATCGCCCTTGTATTCCTCATTGTCCGTCAGATCTTTGAAAGGACGGTGGCTACACCCCTGGCTTCTCTGCTCGGGGTGAAAGAAACAGTGCGGCTCAAAGTCCCTCACAATCCCACACTGGAGTCCTACTACTGTAACATTACCAAAAGTCCAACAGAGACTTCAATAGCAAGTCTTTGCAAGCAGACTGGCTATTCAGAAAGACAAGTGCAGCGATGGTTCAGGAGACGAAGGAACCAGGACAGACCGAGTTTGCTCAAAAAGTTTCGAGAGGCCAGTTGGAGATTTACGTTTTACCTTCTTGCTTTCATTGCTGGCCTGGCCGCCCTCATCGATAAACCTTGGCTTTATGATCTGAAAGAGATGTGGCAAGGCTTCCCTGTGCTGACTCTCCTGCCATCTCAGTATTGGTACTACATGATTGAGCTAGGTTTCTACAGCTCTCTGCTCTTCAGTGTGGCTTCTGACGTCAAACGCAAAGACTTCAAGGAGCAGATAGTTCACCATGTGGCGACCATCCTCCTCATCAGCTTCTCCTGGTGTGTTAATTACATCCGTGCTGGAACTCTCATCATGCTGGTTCATGACTCATCTGATTACTTCCTTGAGTCTGCAAAGATGTTCAACTATGCTGGGTGGCGAAATGCCTGTAACTACATCTTCATTGTATTTGCTGCAATCTTCATTATCACTCGGCTGGTCATCTTCCCCTTCtgGATTATTTACTGTACGTGGGTTTACCCAGTGACCATCTATGAACCCTTCTTTGGCTACTACTTTTTCAATGGACTTTTGATGACTCTGCAGTGTCTACATATCTTCTGGGCTATCCTCATCATACGCATAGCAATCCGCTTCCTCACCAATAATgaaaaagtTGACGATGAAAGGAGTGACAAAGAGGAAACAGATGAATCAGAAGAggagggggaagaggaggaTAAAAAGTACATGAAAAAAAATGGACCAGTGCAGAACGGTCACACAgtccacaacaacaaccaccgCAAGACAGAGTAAAAGTGTCAGGACGAAAGAATCTGAGAAGGACTCATATCCCTCTGTAGGGGAACAGGAgggagggatgaagagagagaaagaagagaggattGTGGTTTAGGGAGGGGCCAAGTCATCCCCTTTAAAGCAAGAACAGCAGGTATCCTGAGGAAGGATTTGACAGTTACTTTTGCACACCACAAACACTCATACATGTTCATTCGTACTATTAGAGGGCACAGAGATCCAGCAGATAATATACACTACATTAGGTGGCATGGCTTTTTTGCTTTGTCATTAGAGAAAAATTATCATTGTCAGTGTGTCAGTCCCAAAATTTTAATAAGGCAGGGAAGAAAATGGATGGAGGATGGGGGTGATGCTGCTTCTACTGCTTCTAGCTTTCCTTGTTCTTTGTGCCTTAGAGCCAGCTAATGGCTGGTAAAATGccatttttaaaaagctttCTGCTTTAATCTTGTGTTGCTTTATTTCGTTGCACCTTTTTGTTTTCtaataaaagaacaaaagagAGTGAAAGTGAGATAATAGGGCATTTAATCCCCTAATTTTTTCCTTGTCTATGCAATTATGTAAGTGTTGAGATATTGCAACGTCTTTGCACAAACACAGTGTCTCTTATATACTGTAATAACTTACAGTAGGACTGTGGCCTCTGGTCTCCAATGCAGCCCGTGCTATTTATAAATTTGCCTTGTTTAAGGTTTAAAGAGTAAATCTTgctttcttgttttaatttcgGTTCAATTCTTAATTCAGTATTGTACAATTCATTCTTCCAAAAGAGATGATCTCTGATCTGCAAAGGTCATCATTCTCAGTTCTTTGCTGTTTGAGCAGGCAGAAATACCCAAGTGCTTAGCACAAACACTGCAATATAAACCACTGCTTCCTGCTAGTTTTGACAAAGCTGAATGTTTTTCCTTTCTGGTTTGGCTAAAGCTGTTTGATACAGTTGAGTCTTGAATCACGCTGATGCTGCCACCTGCTAAAAACCAATGACTCAACAAAATCTTTGCGAAGTTGGGATGCTTTGTTGAAATAAAGGAGTTTTACTAAGTCGAATGGAATGGGACAGATTAACCAATTCCGGATTTCACAAATATGGGCCAGATTTCTTCAATTCACTGCCTTGTAGCCTGGGTTATGTTTGTTAACCTGGGTTAGAATTTTACGTGTTGATCTAAGTGAATGATTTTAGGTATGATTGTGTGTATAAAACGGgttttgatgttaaaaaaaatattgaaatcaaTTTTTAGCAATTTAGTGTTTGAGACTTATGAGGAATTCAAGAAATGAGTGTTGCAGTTTTGTTGTTATGCTTTAGAGTTGGTTGTATGTCAAGTGCCTTATCAGTAATGTATTGGAAGCTCTGTCCTGTCTTCATGTCCACTTGTTTTCTTTCCTGTCTCCACATGACAGATCTAATGCTAAGACTAGTATCTCCTACCTCCACTGTCTCATCCATCACTCCTCTTCTTCATAAATTACCTTCCTTTCAAACTCACCCTCATTCCACCACCACATTCTTTTTTACTAACCCAGACCAACCGGCAACCTCTCTTCCCCAGTGATACAGAAGAAACAGCTGTGTCCTAATTACAGTGTTATTTGTttcttattttgtatttttttttgttcaatgaTGCCTAAGTATTGttattaacaataaaaacaaagatcATGAATCACAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24621 CERS2_4, LASS2_4; very-long-chain ceramide synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99986 lncRNA upstream 276612 22264939 ~ 22312515 (+) False rusc1
TU99992 lncRNA upstream 333649 22255271 ~ 22255478 (+) True G74769
TU99984 lncRNA upstream 343364 22245489 ~ 22245763 (+) True G74765
TU99983 lncRNA upstream 346094 22242817 ~ 22243033 (+) True G74764
TU99977 lncRNA upstream 405090 22183783 ~ 22184037 (+) True G74760
TU100051 lncRNA downstream 16287 22623215 ~ 22625953 (+) True arnt
TU100074 lncRNA downstream 97944 22704872 ~ 22705303 (+) False LOC120562539
TU100087 lncRNA downstream 207116 22814044 ~ 22820053 (+) False myh14
TU100374 lncRNA downstream 311824 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 317664 22924592 ~ 22925155 (+) True G75045
XM_039806461.1 mRNA upstream 3555 22559944 ~ 22585572 (+) False celf3b
XM_039806456.1 mRNA upstream 3555 22559945 ~ 22585572 (+) False celf3b
XM_039806458.1 mRNA upstream 3555 22559945 ~ 22585572 (+) False celf3b
XM_039806457.1 mRNA upstream 3555 22559945 ~ 22585572 (+) False celf3b
XM_039806459.1 mRNA upstream 3555 22559946 ~ 22585572 (+) False celf3b
XM_039805306.1 mRNA downstream 3090 22610018 ~ 22623078 (+) False arnt
XM_039805307.1 mRNA downstream 20419 22627347 ~ 22627532 (+) True LOC120561960
XM_039807302.1 mRNA downstream 22689 22629617 ~ 22643078 (+) False setdb1b
XM_039807304.1 mRNA downstream 22689 22629617 ~ 22643078 (+) False setdb1b
XM_039807303.1 mRNA downstream 22871 22629799 ~ 22643078 (+) True setdb1b
XR_005639804.1 other upstream 3555 22559945 ~ 22585572 (+) True celf3b
XR_005639857.1 other upstream 99183 22469978 ~ 22489944 (+) False rprd2b
XR_005639856.1 other upstream 100409 22469978 ~ 22488718 (+) False rprd2b
XR_005639675.1 other upstream 282975 22296848 ~ 22306152 (+) False rusc1
TU100002 other upstream 300833 22285304 ~ 22288294 (+) False fam189b
TU100045 other downstream 10044 22616972 ~ 22623084 (+) False arnt
TU100052 other downstream 10044 22616972 ~ 22623084 (+) False arnt
TU100065 other downstream 53551 22660479 ~ 22667544 (+) False LOC120562537
TU100082 other downstream 207116 22814044 ~ 22820053 (+) False myh14
TU100365 other downstream 293216 22900144 ~ 22902048 (+) False cnot3a

Expression Profile