RNA id: XM_039807303.1


Basic Information

Item Value
RNA id XM_039807303.1
length 4304
RNA type mRNA
GC content 0.50
exon number 25
gene id setdb1b
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22629617 ~ 22643078 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGTCTTTGTGGACACCAGATGACACCATGCTGTTTGTTTTCCAGACACCTGCACCAGTCAGTCAAGAGATAGACTTTCTCCATGCTAATGCTAGGCTAACGAGCTAGTCTGCTGTTGTAGGCTTCAATTTGATGTCTTTTAGCTGCTCTGCTCGCCCAGATTTTTCTCAATAAAGTACCAGTTAAGTTATGGTGGGTTAAACTAGCAGTTACTCTGTCTGCCGAGATTAAATCGGAAAATATCCAGAATGGAAGTGGATAGCTGGGACTCCAATCTCGAGGAAGAGCTGGGCATTTCTTTGGATGAGCTGAAGAAGTGGATTGACGATGCCGTGGATAAGAGCGAGATTGTGCAGAAGAAAAAGGCTCAGCTGACAGAGCTGAAAGAATGggtagaaaagaaagaagaagaggaggcgATGACGGACATGCTTCTTACCGATGCCAACAAATCCTTATTGGAGTGTGAGAAGCTTGTGAAGGACACGTATAAGAAGAACGGTCTCGTTTACCGAGAGAGCAGTTCAGAGGATGAGGGGGGTGGAGGTGGCAAGTTGTTCTCTGAGGTCATCGAGATAGACGATGATGACGACGATGATGTCATTGCTGTTGGCTGTTTGGTTCCTCCAAAGATGCCTGTCACTCCTGGCAAAGATCCAGTGtTAAAAGAGGTCTCCACAGCGCTACAGAAAGCCTCCCAGCAGGTGCAGAAGTTGGTCCAAATTGTCAACAAGCCTTCACTAGGTGCTCCATTGCTCCGATCTCCATCACAGCCTCCATCCCAGTCAGCTACTCAGGCTTCAGTGCCAGCAGTGTTTGTATCCCAGGTTCCATCTCAGTCCATGACCCAGCCCAACCCAAACATAACAGAAGATGAGCTCAGAGTTGGGATGACCATTCTGGGAAAGAAACGCACCAAGACATGGCACAGAGGCGCCCTCGTTGCTATTCACCCTGCCGGAAATGGCATATTCAAGTATAAAGTGAAGTTTGATAAAGGAAAGAGTCTGCTGTCTGGAAATCATGTGGCTTTCGAGTATAACCCCACCCTGGAGATTCTGTATGTCGGGGCTCGTGTAGTCGCCAAGTACAAGGACGGCAACCTGGTGTGGCTCTATGCTGGAATAGTAGCAGAGATGCCCAACAACAAAAATCGTATGAGGTTCTTGATATTCTTTGATGATGGCTATGCTTCCTATGTGACACTACCTGAGCTCCACCCAGTTTGCCGACCATTAAAGCGTACCTGGGAGGACATAGAGGATGCATCGTGTCGAGACTTCATCGAGGAGTACATCACTGCATATCCCAGCAGGCCTATGGTGCTCCTAAAAGTTGGACAGATCATCAAGACAGAGTGGGAGGGAACTTGGTGGAGGAGCAAAGTGGAGGAGGTGGATGGAAGCTTGGTCAAGATCCTCTTTTTGGATGACAAGAGGAGTGAGTGGATTTATAGAGGCTCTACCAGGTTAGAGCCAATGTTCAACCTGAAGATGACCACCGCCAACACCCAGGAGAAGAAGCTTGCTGGCCAGCAGCGGACACGACCTAACATGGGGGCGTTGAGGAGTAAAGGCCCAGTAGTTCAATACACCAGTGACGGACAAGTTGGTGCCTCTCCGGTCAAAACGCTGCAGGCCTCACCCAGCCAGCTTTCACAGACACCACAATATCAACCGCGTCCTCAGCCCCCACAGCCCCAACAAATCCCACAGCCCCAACAAATCCCACAGCCACAACAAATCTCACAGCCCCAACAAATCCCACAGCCTCAACAGCCTCAACAGCCCCAACAGCCCCAACAAACCCAACAGACGCTTCAGCCTCCTCAACCTCTTCAGCCCCCACAGCCTCTACGTGTTGACAATAAACATCAGATGGCAAAGAAGAGTACTTCTCCGTTTGTCCCTGGTGTGGGAGGCACTCATGCCTCCAAGATCATTCAGCAGTCTCTTTCCTCCAGTCCCAGCAACCTCTCTGGTGGAAGAATGTTGAGTGTCCAAAATATTGCTACGCCCACTTTCACACAGCCGTATCAGAGACTGCCCTCTCTGGCTCCCGGCCCCGCTCCTATGACCCACACCACAGCCATTATCCCACATCAGCCCGCGTACCGTGCCCCAACGGACCGCATCTTCTACCTGGCACACACTTGTCAGCCCGCCTGTCTGAATCGCGTCCGACCTGCAAGATCAGACATGCACAGAGGAAAGAACCCCCTCCTCACACCTTTACTGTACGATTTCAGACGCATGACGGGACGACGCAAAGTCAACCGCAAGATGTCCTTCCACGTGATTTACAAGGCTCCGTGTGGGCTTTGTCTACGTAACATGGAAGAGATCCAGCACTACCTCTTCCAGACTCGCTGTGACTTTATATTCTTAGAGATGTTCTGTCTAGACCCCTACGTGCTTGTGGACCGGCCCTTCCAGCCACAGAGGCCAGTCTATTACATTCCCGACATCACTAGTGGACGGGAGGATATCCCACTCTCCTGCGTCAACGAGATCGATTCCACCCCGCCTCCTAAAGTAGCTTACAGTAAAGAGCGTATTCCTGAAGATGGAGTATACATCAACACCAGTCCAGACTTCCTGGTTGGGTGTGATTGCACCGACGGCTGTCGAGACAAGTCGAAATGCTCTTGCCACCAGCTGACCCTTCAGGCTACAGGTTGTACACCGGGGGCACAGATCAACCCAAATGCTGGATATTTCCACAAACGATTAGAGGAGTGTCTCCCCACAGGgatcTACGAGTGTAATAAGCGGTGCAAATGCTGTGCTCAGATGTGCACCAACCGTTTGGTGCAGCACGGCCTGCAGGTGCGTCTCCAGCTCTTCAAGACCCAAAACAAAGGCTGGGGCATCCGCTGTCTGGATGACGTGGCCAAGGGCTCTTTTGTCTGCATCTATGCTGGTAAAATCTTGACCGATGACTTTGCCGACAAAGAAGGTCTAGAGATGGGTGATGAATATTTCGCCAACCTTGACCATATAGAGAGTGTGGAGAACTTCAAAGAGGGCTATGAGAGCGAGGCTCATTGTTCGGACAGCGAGGGGAGCGGCGTGGACATGACGAGGTTAAAAATCCAACCATCCGCTTTAGTATCATCTAACCCTGTGGGGAGACCGCCCAAAAAGGGTGAGTCCAAGTCAAAAGCCCAAAGCCCAAGCTCATCAGGAGACAGCAATGACGATGAGGACAAGGATTCAAAAAGTGAAGATGAAAGTGACAGTTCAGACGACACGTTTGTGAAGGAAAACTACTTCTCTTCTAGCTCTGTGTGGAGGAGCTACACCACACGTGGTCAGGCCAAGGGCAACAAGGAAGGGAGTCAAGACAGTAAAGATGGATTGAGTGCATCAGCCAAAGGAACTGATGATGAGAAGCCGCTGTCCATGCCAGAGGAGATGGGGAAAAACAAAGTGGCTTCCTGGCTCACCAGCCAGAGTCTGAAGAAGGAATCTGGAGACAGCAAGAGCCAAGTGAAGTCAGAAACGGGGAAGAAGCAGGATGTGATGACTGTTTCTGACAGCGATGACGTTCAGACCATCAGCTCTGGATCTGACGAcaacaaggagagagagaaagtcccCACGGGCGTGACTAAGAAGCAGGTAGCAGTGAAATCTACACGCGGCATCGCCCTGAAGAGCGGCCACGGGATGATGGTGAAAACAGGTGCACCTGGAGGCGGGGGAGGGCCGGGGGGGCAGGGAGGAAAAACAGGACAGCAGAGGCAGTCTGGGGGAGGCGGGGACAACACTCTCAAAAGCACCCGTCTGTTCTTTGATGGCGAGGAGTCCTGCTACATCATTGATGCCAAGTTGGAAGGAAACCTTGGGCGTTACCtaaatCACAGCTGTAGTCCTAACCTTTTTGTCCAGAATGTGTTTGTGGACACACATGACTTGAGGTTTCCCTGGGTGGCATTTTTTGCCAGCAAGCGGATCCGGGCCGGCACAGAGCTGACCTGGGACTACAACTATGAGGTGGGCAGTGTGGAGGGGAAggtgctgctctgctgctgcgGATCCACTGAGTGCAGAGGAAGACTGCTGTGATCTGCAGCCATCATGGACTTCACTGCCTCTGCTGTGTTTCTAGGAAACTTAGAGAAGCCGTTTCAacactgtaactttttttttattgtgtatttttaAGTTGACTTATGTATTTTATTACTGTTGTTTtgttgcccttttttttttaaatatgaacatTTTTCCTGATTTGTCTCATTTTATCCATGACAATTTACTTTACATCTTAATAAAATGCAACTTTCTTCAATGAA

Function

GO:

id name namespace
GO:0034968 histone lysine methylation biological_process
GO:0018022 peptidyl-lysine methylation biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11421 SETDB1; [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100051 lncRNA upstream 3846 22623215 ~ 22625953 (+) True arnt
TU99986 lncRNA upstream 317284 22264939 ~ 22312515 (+) False rusc1
TU99992 lncRNA upstream 374321 22255271 ~ 22255478 (+) True G74769
TU99984 lncRNA upstream 384036 22245489 ~ 22245763 (+) True G74765
TU99983 lncRNA upstream 386766 22242817 ~ 22243033 (+) True G74764
TU100074 lncRNA downstream 61794 22704872 ~ 22705303 (+) False LOC120562539
TU100087 lncRNA downstream 170966 22814044 ~ 22820053 (+) False myh14
TU100374 lncRNA downstream 275674 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 281514 22924592 ~ 22925155 (+) True G75045
TU100406 lncRNA downstream 339814 22982892 ~ 22987322 (+) True G75065
XM_039805307.1 mRNA upstream 2267 22627347 ~ 22627532 (+) True LOC120561960
XM_039805306.1 mRNA upstream 6721 22610018 ~ 22623078 (+) False arnt
XM_039807301.1 mRNA upstream 22871 22589127 ~ 22606928 (+) True cers2b
XM_039806460.1 mRNA upstream 44227 22559946 ~ 22585572 (+) False celf3b
XM_039804823.1 mRNA downstream 268 22643346 ~ 22651387 (+) True LOC120561656
XM_039804824.1 mRNA downstream 268 22643346 ~ 22651387 (+) False LOC120561656
XM_039804708.1 mRNA downstream 8560 22651638 ~ 22657098 (+) True clk2b
XM_039806263.1 mRNA downstream 18064 22661142 ~ 22667885 (+) True LOC120562537
XM_039806261.1 mRNA downstream 24838 22667916 ~ 22674134 (+) True LOC120562535
TU100045 other upstream 6715 22616972 ~ 22623084 (+) False arnt
TU100052 other upstream 6715 22616972 ~ 22623084 (+) False arnt
XR_005639804.1 other upstream 44227 22559945 ~ 22585572 (+) True celf3b
XR_005639857.1 other upstream 139855 22469978 ~ 22489944 (+) False rprd2b
TU100065 other downstream 17401 22660479 ~ 22667544 (+) False LOC120562537
TU100082 other downstream 170966 22814044 ~ 22820053 (+) False myh14
TU100365 other downstream 257066 22900144 ~ 22902048 (+) False cnot3a
TU100710 other downstream 848047 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 1121237 23764315 ~ 23764645 (+) True LOC120563205

Expression Profile