RNA id: XM_039807327.1


Basic Information

Item Value
RNA id XM_039807327.1
length 5002
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC120563175
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36111050 ~ 36129242 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tataaaaaatgtcctACACGTTCATCTCAGTCACCTTGGATTATTTCCACAGCTCCAGTGAGTGTGGTTCCTCTCTGACTGCCTACTTTCAGCCTCAAGTGTGTTTTAACAGCGACAGGTTGAGGTGTTGATCCGAAGACTAACCGATGTTCTAAAGTCAAGAAGATGGGAGGATCTGCGTCTACAAGTGACTGTCCCAGATTCAATGGAAATCCTCCAGGCTTTAACACTGAACCTAGACCTTCACAAACAAGTTTTTACAGTGACCAGTCTACTTCAAGCAATCAGGAGAACCAGAACACCCTGAAGGTGTTTGAATCTAAAGTCATGGCTTTCGTAAAGCAAGCTCTGGTGACACATAAGAAGGTCCTTTCTGAAAACCACAAAGAATTGTTTGAGGAAGACGAGCAGGAGGAAGTGCTTGATGATCAGCCGGTTGAGTTTGATGATGAAACAAGTGAAGCAGCTCTGAAGATTGCTCTCCATATCTTGAGGGCCATGAAGGCGGATGAACATGCTCACACACTTGAGCAAAGTCATTATGGAGAACTCGTCATGTaccaacagaaaataaaaccttACCTGAAGGAGAAAAGTGACTGCATATTGGAAGAGACACAGCAGTGGCCTGTGCCTCTTAGAAAGATTTATACAAAGCTATATCTGATAGATGGGGACTTTGGAGAAGTCAACATTGAACATGAAGTGAGACAAATTGAGACAGCCTTTAACAGACGTCAGAATTCTTCTGAAACTCTGATCAAGTGTGAAGACATCTTCAAGGCCAAACACAACCAAATAGCCAAACCAATCCGAACGGTGCTCACGAAGGGGATAGCAGGCATCGGCAAAACTGTGATGGCACAGAAGTTCATGCTGGACTGGTCGGAGGATAAGGCCAATCAAGACATCCAGCTCCTGTTTTCACTTCCTTTAAGGGAACTAAATTTTCTCAAAAATGAAACAAGAAGTTTGATGGAGCTCCTGTATGACTTCTCTCCAGGCCTGAATGAATCTGGAATAAAAGACCTACAGATGTACAAAGTTATGTTCCTACTGGATGGTCTCGATGAGTGCAGACTCCCTCTGGATTTCAAAGGAAATGAGAGATGTTGTGAAGCTACACAGTCTGCCTCCGTGGATGTACTCCTAACAAACCTCATTGCAGGTCAACTGCTACCAAAAGCTAAACTTTGGATAACTACTCGGCCTGCTGCCGCAAACTGCCTCCCTTCACAGTATGTCGACCGGGTGACTGAGATACGAGGCTTCAACAACCTACAGAAGGAGCAGTACTTCAACAAGAAAATCGATGATGAAACCTTAGCCAGAAGAGTTATCGCAAACATAAAGTCGACTAGAAGTCTCTACATCATGTGCCACGTGCCGGTGTTTTGCTGGATTTCCTCTATCGTCCTTGGAAAAATGTGTGCCAAAGCAGGCGGAGGAAAAATGCCAAAGACTTTGACTCAGATGTACATCCACTTTCTGGCACATCAGACTGTACAGATTCATGTCAAGTACGGCAAAGAGCAACAACTGGACTCCCAAGGTAATAACAAGGTGATTATGGCACTTGGGAAGTTGGCCTTCCAGCAGCTGgagaaaggcaacctgatcttctatgagGACGATCTAAGAGACTGTGGTATTGATGTCAAAGACGCCTCTGTCTACTCAGGAGTGTGCACTCAAGTCTTTAGGGAAGAGTCCTGGATGCAGCATAAAGTCTTCTGCTTTGTGCATCTGTCTGTCCAAGAGTTTCTCGCAGCTTTGTATGTCCACGTGATGTACAAGGCCTATGGACTAAACCTGATGACCGAAGAACCTGAACAGGTAGACCACGCCAAGCCTGTATCCGAACTGCACAAAGCTGCAGTGGACAGAGCCTTAAAAAGTGACAACGGCCACCTGGATCTCTTCCTGCGTTTCCTTTTCGGACTCTCTCTGGAATCCAGTCAGGGTCTGCTCAGAGGCCTGAACATTAAGGTAGAAACCTGTGACTCCCAAAGTCATGAGGAAACCATCAAGTACATCAAGGAGAAAATAGATCAGACTCATCAGTCCGAGAGGTACATCAAtctcttccactgtctgaatgagtTAAATGAACACACTCTGGTGGAGGAGATCCAGAGCCACTTGGACTCAGACCAAGACTTGGCAATGGACGGGTGCTCTGCAGCTCGGTGGGCGGCTCTAGTCTTTGCGTTGCTGACCTCACCGGAGAAGCCAGAGGAGATCCACCTCAAGAAATACTCCAGAACAGAAGGCGGCCTTTTCAGGCTCCTACCAGCCATCAAAGCATCCAGATCAGCAAAGTTGAATGATTGTAATCTCACTGCAGACTGCTGTCAGAAGCTGTCAGAAGCTTTCAGCTCAAGCTCTAATGAGCTGATTCACTTAAACATAAGTGACAACAACTTACAAGACTCAGGAATCGATTCTCTCTGCGCTGGACTCCGAAGCccacactgcagactgaagACCCTGAGGCTGAACCGATGTGGTCTGACTCAGGGATGCTGTGAAAAGCTGGCTTCAGTCCTGAGCTGTCCATCATCACATCTccgagagctggacctgagtgaCAACGACATTGAAGATTCAGGGGTGCAGCAGCTCTCCACTGGACTGAGAAATGTTGTCTGTAAACTGGAAACCCTCAGGTTGTCATTCTGTAACATCACAGAGAAAGGTTGTGGTTTCTTGGCCTCGGCAGTGAAGTTCAACCCCTCCCACCTAAgcgagctggacctgagctacaatcacTTAGGAGAGTCGGGAGTGAAGCTCATCTCTGAAGCTTTGGAGGAAGGACGGAGTGAATTAACTAAACTCAGAGTCGACCACAACGCAGAACACTGGTTCAAACCAGGGCTGAGACGATATGCCTGTGAACTGACACTGGATCCTAACTCCGCTCACAAACTCCTCGCCTTCTCTGACGACGGACGAAAGGTTAGCCAGGTCCGAGAGGAGCAGCCATATCCAGATCACCCTGACCGGTTTGACTACTGGCCAGAAGTCCTATTCCAGGACGGCCTAAAGGGCCACCGAtactgggaggtggagtggGAGGGAAAATGGGTCGGGATCGGAGTGACCTACAGGGGCATCAGTCGAAAAGGGTCGGGCAACGACTGCGTGATGGGTTACAATGGGATATCTTGGAGTCTGCACTGTTCCGGAAAAGGCTACCGTGCGTATCATAACTTCGAGAGCACTGCCGTACCAGTCCCTCTGAATGATAACTCTGGTAGACTGGCTGTGTATCTGGACTGGGAGGCTGGCATCCTGTCCTTCTACAGAGTTTCTTCAGGAGGGTCGCTGACACACCtgcacaccttcaacaccaaaTTCACTGAGCCGCTCTACCCAATTTTCAGGGTGTGGGGTGAAGGCTCCTCAGTAAGGCTGAGTCGGGTGGAATAAGTTgacaaagaaaagactcaaTGAGGGATGATTGCAATGAATCAATGTATGATTAGCAGACCCGAatggaatctttttttttagtggtgatccagaatgaaactGCAGTCCTACCCGGTGGTAGTGACAGGCTGACACCGGTGTGGAGGACAGTGTGACAGGAAGAGGAGCTTAGCTGCATTCAATAATAACTAAGTGCGCAGTGAGTATGAGGTcgtgagagagagatggtggaTGAGTAAAGTAAAGGTGGAAGAGTAAAGCTGTCAAGTAGTTGTTAAGTGTACAGTGTAGGTcggtttgtttttgtaaatatcTAAGGCGCCTGCGAGAATAGACTGCAGTAATCAGTACCCGAGATACTATTTATCACTTATAGGTGAAttacctgtttctctgtgttgtgtgtaaacATTATGCCGGGATAAATTTTAAAACCAGAAAACTAATGTCCGTGGAAACCCACCCGTTGATTTAAGAAATGTGTGCCTCCCTAAATTGGACTTTCCTGCAGTAGCATGAAGTCGTACTGCGGCTTGCTCAAAGCCTTTATTCAGATTCAGGTTGCTCAGGGGGTAACCTtaggttcaacattggggggttgagatctccatcTATCTAGGGAGGTCCTGGGACATGCCTGCATTTTTTTgaaagaagcaacaaaaacattgaaagaaTTGTCGAAAGAAAGccgcaaacatttttttttaagcttaacTTTTGAATAATCGTTTgtattatagtatataacaACAAATCATCTGCAAAAACAAAACTCTGCTTGTCTTTTGCATCTTCCAAAACAATCATATACTTCATAATAAACATGAATTAActgacatttaaaagaaaaaaaactgcaaaatataaaaaaacacaactgaaaaaaaaatgcaaatcttTTTATAATTAAAGAAGACAGTAAAGGCAACAAAGGACAAGTCGTCCTAAGTAactcacatttacacattttcagattcatgtatactattttatttcattattacttttttatttgaaaGCAGATATGTTTCCATTGTCTCTATGACATGGTATTTAAATGTGATAACTTTCCAAATTGTTACGTAAATtaacataaatgttttttttataatgttaacttttttatattttatacatttttattgtatagttttaatattttcagtttttgtctgtatttttctattttttatgaaACTACTAGACCATCCTCAAAATAAGTAAATTGTAGCACACCTTAGgcaattttaacaaaataaaatgtaacttcCCACAATATTGTGGCTAGTGGAAATGCTGGGTGGCCAGTAACTTTGGAAAACCACAGTGGCTGCTGAGCAAAAGAAGTTGAGGTCAAGCCCCGTTTAAACATGATAAATTAATCTATTATCAAAATATGCAAATTCCCTGTTGATTTGCTGCAGTTATCATTGCAGGAATCCTGTGTATTTATCGACCTGTAATTTATATAATATAGTTTTATAGACATCACTTTATACCTGCATCGGTCTATTCactgttttgtttgtctgtgcatAAACACTAACATAACCTAAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105328 lncRNA upstream 22954 36087873 ~ 36088096 (+) True G78756
TU105307 lncRNA upstream 76398 36034348 ~ 36034652 (+) True G78736
TU105281 lncRNA upstream 147545 35962773 ~ 35963505 (+) True G78716
TU105272 lncRNA upstream 182154 35928440 ~ 35928896 (+) True G78707
TU105271 lncRNA upstream 201981 35908820 ~ 35909069 (+) True G78706
TU105332 lncRNA downstream 14435 36143677 ~ 36159302 (+) False G78759
XR_005639918.1 lncRNA downstream 32538 36161780 ~ 36172164 (+) True LOC120563188
TU105368 lncRNA downstream 128918 36258160 ~ 36294387 (+) False G78772
TU105373 lncRNA downstream 159550 36288792 ~ 36289154 (+) True G78776
TU105357 lncRNA downstream 205875 36335117 ~ 36339554 (+) True G78770
XM_039807323.1 mRNA upstream 918 36092199 ~ 36110132 (+) True dek
XM_039807298.1 mRNA upstream 84479 36024626 ~ 36026571 (+) True LOC120563160
XM_039805921.1 mRNA upstream 210158 35896350 ~ 35900892 (+) True LOC120562276
XM_039806167.1 mRNA upstream 227115 35875127 ~ 35883935 (+) True LOC120562454
XM_039805923.1 mRNA upstream 238806 35865849 ~ 35872244 (+) True LOC120562279
XM_039807329.1 mRNA downstream 48965 36178207 ~ 36190415 (+) True LOC120563177
XM_039807330.1 mRNA downstream 48965 36178207 ~ 36190415 (+) False LOC120563177
XM_039807339.1 mRNA downstream 231458 36360700 ~ 36367025 (+) True nat16l
XM_039807338.1 mRNA downstream 239452 36368694 ~ 36383096 (+) True LOC120563182
XM_039807337.1 mRNA downstream 263015 36392257 ~ 36450204 (+) True LOC120563181
TU105193 other upstream 222878 35865842 ~ 35888172 (+) False LOC120562279
TU105077 other upstream 702368 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 922851 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 1254518 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 1566671 34529355 ~ 34544379 (+) False G78200
TU105334 other downstream 8517 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 164745 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 263010 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 263010 36392252 ~ 36465230 (+) False LOC120563181
TU105437 other downstream 562151 36691393 ~ 36703865 (+) True LOC120562457

Expression Profile