RNA id: XM_039807330.1


Basic Information

Item Value
RNA id XM_039807330.1
length 5326
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC120563177
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36178207 ~ 36190415 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttcacacacatactgtatgtgtgaaacCCATCCCCCTTTAGAGGGTGAAAGTGAAAGTAGAAGTTGTTTCCTGCTGAACTTAACCGCCTGTTTCTTTCTATCTGCGTCAGTGTGTTCTAACAGCGACAGGTTGAGGTGTTGATCCGAAGACTTACTGGTGATTCAATCTGAATGGACGCTGAGGAAAATCAAATCCCAGGAATGTCCTCCAGACCCCTTACACTGAACCCAACTTTTATCAAACAAGATTCACTGAAGTCAAGAAGATGAATAAATCTCGGAGAAGATCAGCGTCTTCAAATGTCAGTTTAATGTCTGAAAAGACTGACCGCTCCAGAGAATATCCTCCAGACGTGAGCTCTGAATCCAGACCTTCACAAACAAGATCCACTAAAGTCAAGAAAAGGGTAAACGTCAGAAAACATCAGCGTCTTCAAATGTCAGTTTAATGTCTGAAAAGACTGACCACTCCAGAGAATATCCTCCAGACTTGACCTCTGAACTCAGACCTTCACAACCAAGTGGCCAGACCACATCAGGCATTTGGCGGAAGCAGAACACCCTGCAGGTGTTTGAATCTAAAGTCATGGCTTTTGTAAACCAAGCTCTGATGTCACATAAGAAGGTCCTTTCTGAAAACCACAAAGAATTGTTTGAGGAAGACAAGCAGGAGGACGTGTTTGATGATCAGCCGGTTGAGTTTGATGATGAAACAAGTGAAGCAGCTCTGAAGATTGCTCTCCATATCTTGAGGGCCATGAAGGCGGATGAACATGCTAACACACTTGAGCAAAGTCATTATGGAGAACTCGTCATGTgccaacagaaaataaaaccttACCTGAAGGAGAAAAGTGACTGCATATTGGAAGAGACACAGCAGTGGCCTGTGCCTCTTAGAAAGATTTATACAAAGCTATATCTGATAGATGGGGACTTTGGAGAAGTCAACATTGAACATGAAGTGAGACAAATTGAGACAGCCTTTAACAGACGTCAGAATTTTTCTGAAACTCTGATCAAGTGTGAAGACATCTTCAAGGCCAAACCCAACCAATCAGCCAAACAAATCCGAACGGTGCTCACGAAGGGGATAGCAGGCATCGGCAAAACTGTGATGGCACAGAAGTTCATGCTGGACTGGTCGGAGGATAAGGCCAATCAAGACATCCAGCTCCTGTTTTCACTTCCTTTAAGGGAACTAAATTTTCTCAAAAATGAAACAAGAAGTTTGATGGAGCTCCTGTATGACTTCTCTCCAGGCCTAAAGGAATCTGGAATCAAAGACCTACAGATGTACAAAGTTATGTTCCTACTGGATGGTCTTGATGAGTGCAGACTCCCTCTGGATTTCAACAGAAATGAGAGATGTTGTAAAGCTACACAGTCTGCCTCCGTGGATGTGCTCCTGACAAACCTCATTGCAGGTCACCTGCTACCAAAAGCTAAACTTTGGATAACTACTCGTCCTGCTGCCGCAAACCGCCTCCCTTCACAGTATGTCGACCGGGTGACTGAGATACGAGGCTTCAACAACCTACAGAAGGAGCAGTACTTCAACAAGAAAATCGATGATGAAAACTTAGCCAGGAGAGTTATCGCAAACATAAAGTCGACTAGAAGTCTCTACATCATGTGCCACGTGCCGGTGTTTTGCTGGATTTCCTCTATCGTCCTTGGAAAAATGTGTGCCAAAGCAGGCGGAGGAAAAATGCCGAAGACTTTGACTCAGATGTACATCCACTTTCTGGCCCATCAGACTGTACAGATTCATGTCAAGTACGGCAAAGAGCAACAACTGGACTCCCAAGGTAATAACAAGGTGATTATGGCACTTGGGAAGTTGGCCTTCCAGCAGCTGgagaaaggcaacctgatcttctatgagGGCGATCTAAGAGACTGTGGTATTGATGTCAAAGACGCGTCTGTCTACTCAGGAGTGTGCACTCAAGTCTTTAGGGAAGAGTCCTGGATGCAGCATAAAGTCTTCTGCTTTGTGCATCTGTCTGTCCAAGAGTTTCTTGCAGCTTTGTATGTCCACGTGATGTACAAGGCCTATGGAGTAAACCCGATGACCAAAGAACCTGAACAGGTAGACCACGCCAAGTCTGTATCCGAACTGCACAAAGCTGCAGTGGACAGAGCCTTAAAAAGTGACAACGGTCACCTGGATCTCTTCCTGCGCTTCCTTCTCGGACTCTCTCTGGAATCCAGTCAGGGTCTTCTCAGAGGCCTGAACATTGAGGTAGAAACCTGTGACTCCCAAAGTCATGAGGAAACCATCAAGTACATCAAGGAGAAAATAAATCAGACTCATCAGTCCGAGAGGTACATCAAtctcttccactgtctgaatgagtTAAATGAACACGCTCTGGTGGAGAAGATCCAGAGCCACTTGGATTCAGACCAAGACTTGGCAATGAACGAGTGCTCTGCAGCTCGGTGGGCGGCTCTAGTCTTTGCGTTGCTGACCTCACCAGAGAAACCAGAGGAGATCCACCTCAAGAAATACTCCAGAACAGAAGACGGCCTTTTCAGGCTCCTACCAGCCATCAAAGCATCCAGATCAGCAAAGTTGAATGATTGTAATCTAACTGCAGACTGCTGTCAGAAGCTGTCAGAAGCTTTCAGCTCAAGCTCTAATGAGCTGATTCACTTAAACATAAGTGACAACAACTTACAAGACTCAGGAATCGAGTCTCTCTGCGCTGGACTCCAAAGCccacactgcagactgaagACGCTGAGGCTGAACCGATGCGGTCTGTCTCAGGGATGCTGTGAAAAGCTGGCTTCAGTACTTAGCTGTCCATCATCAGATCTccgagagctggacctgagtgaCAACGACATTGAAGATTCAGGGGTGCAGCAGCTCTCCACTGGACTGGGAAATGTGGTCTGTAAACTGGAAACCCTCAGGTTGTCGTTCTGTAATATCACAGAGAAAGGTTGTGGTTTCTTGGCCTCGGCAGtgaagtccaacccctcccacaTGAgtgagctggacctgagctacaatcacTTAGGAGAGTCGGGAGTGAAACTCATCTCTGAAGCTTTGGAGGAAGGACGGAGCGAATTAGCTAAACTCAGAGTCGACCACAACGCAGAACACTGGTTCAAACCAGGGCTGAGACGATATGCCTGTGAACTGACAGTGGATCGTAACTCTGCTCACAAAGTCCTCGCCTTATCTGATGGCGGACGAAAGATTAGCCAGGTCCGAGAGGAGCAGCCATATCCAGATCACAACGACAGGTTTGACTACTGGCCAGAAGTCCTATTCCAGGAGGACCTAAAGGGCCGCCGAtactgggaggtggagtggGAGGGGAAATGGGTCGGGATCGGAGTGACCTACAGGGGCATCAGTCGCAAAGGGTCGGGCAACGAATGCGTGATGGGTTACAATGGGATATCTTGGAGTCTGCACTGTTCGGGAAAAGGCTACCGTGCGTATCATAACTTCGAGAGCACTGCCATACCAGTCCCTCTGAATGAAAACTCTGGTAGACTGGCCGTGTATCTGGACTGGGAGGCTGGCATCCTGTCCTTCTACAGAGTTTCTTCAGGAGGGTCGCTGACACACCtgcacaccttcaacaccaaaTTCACTGAGCCGCTCTACCCAATTTTCCGGGTGTGGGGTGAAGGCTCCTCAGTGAGGCTGAGTCGGGTGGAATAAGTTGACAAGAAGAAAAGAGTCAATGAGGGATGATTGCAATGAATCAATGTATGATTAGCAGACCCGAATGGAATCTGCagattttttctttgttttttttagcggtgatccagaatgaaactGCAGTCCTACCCGGTGGTAGTGACAGGCTTACACCGGTGTGGAGGACAGTGTGACAGGAAGAGGAGCTTAGCTGCTTTCAAGAATAACTAAGAGCGCAGTGAGTGTGAGGtcatgagagagagatggtggaTGAGTAAAGTAAAGGTGGAAGAGTAAAGCTGTCAAGTAGTTGTTAAGTGTACAGTGTAGGTcggtttgtttttgtaaatatcTAAGGCGCCTGCGAGAATAGACTGCAGTAATCAGTACCCAAGATACTATTTATCATGTATAGGTGAATTACCTGGTTTCTCTGTGTTGCGTGTAAACATTATGCCGGGATACATTTTATAACCTGAAAACTAATGTCCGTGGAAACCCACCCGTTGATTTAAGAAATGTGTGCCTCCCTAAATTGGACTTTCTTGCAGTAGCATGAAGTTGTACTGCGGCTTGCTCAAAGCCTTTATTCAGATTCAGGTTGCTCAGGGGCGTAACTTtaggttcaacattggggggttgagatctccatcTATCTAGGGAGGTCCTGGGACATGCCTGCATGAATTGAGAAaagcgagagaaaaaaaacgttgaaagaagcaacaaaaacattgaaaaaattgtcGAAAGAAAGCTGCAAACATTTCTTTTAAGCTTAACTTTTGAATAATCGTTTgtattatagtatataacaACAAATCATCTGCAAAAACCAAACTCTGCTTGTCTTTTGCATCTTCCAAAACAATCATATACTTCATAATAAACATGAATTAActgacatttaaaagaaaaaaactgcaaaatataaaaaaaaacacaactgaaaaaaaaatgcaaatcttTTTATAATTAAAGAAGACGGTAAAGGCAACAAAGGACAAGTCGTCCTAAGTAactcacatttacacattttcagattcatgtatactattttatttcattattacttTCTTATTTGAAAGCAGATGTTTCCATTGTCTCTATGATGTGGTATTTAAATGTGATAACTTTCCAAATTGTTACGTAAATTAACATAaacgttttttttataatgtttgactttttatattttatacatttttattgtatagttttaatattttcattttttgtctgtatttttctattttttatgaaACTACTAGACCATCCTCAAAATAAGTAAATTGTAGCACACCTTAGgcaattttaacaaaataatgtAACTTCCCACAATATTGTGGCTAGTGGAAATGCTGGGTGGCCAGTAACTTTGGAAAACCACAGTGGCTGCTGAGCAAAAGAAGTTGATGTCAAGCCCCGTTTAAACATGATAAATTAATCTATTATCAAAATATGCAAATTCCCTGTTGATCTGCTGCAGTTATCATTGCAGGAATCCTGTGTATTTATCGATCTGTAATTTATATAATATAGATTTATAGACATCACTTTATACCTGCATCGGTCtattaattgttttgtttgtctgtgcatGAACACTAACATGTTGTTATGGATTCATTAAAAGTAACCTAAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639918.1 lncRNA upstream 6043 36161780 ~ 36172164 (+) True LOC120563188
TU105341 lncRNA upstream 18905 36128879 ~ 36159302 (+) False G78759
TU105332 lncRNA upstream 18905 36143677 ~ 36159302 (+) False G78759
TU105342 lncRNA upstream 44927 36128879 ~ 36133280 (+) True G78759
TU105328 lncRNA upstream 90111 36087873 ~ 36088096 (+) True G78756
TU105368 lncRNA downstream 67745 36258160 ~ 36294387 (+) False G78772
TU105373 lncRNA downstream 98377 36288792 ~ 36289154 (+) True G78776
TU105357 lncRNA downstream 144702 36335117 ~ 36339554 (+) True G78770
TU105400 lncRNA downstream 207634 36398049 ~ 36415884 (+) True G78798
TU105421 lncRNA downstream 256232 36446647 ~ 36447215 (+) False G78813
XM_039807327.1 mRNA upstream 48965 36111050 ~ 36129242 (+) False LOC120563175
XM_039807339.1 mRNA downstream 170285 36360700 ~ 36367025 (+) True nat16l
XM_039807338.1 mRNA downstream 178279 36368694 ~ 36383096 (+) True LOC120563182
XM_039807337.1 mRNA downstream 201842 36392257 ~ 36450204 (+) True LOC120563181
XM_039807340.1 mRNA downstream 338066 36528481 ~ 36541530 (+) True LOC120563185
XM_039806169.1 mRNA downstream 438486 36628901 ~ 36670029 (+) True LOC120562456
TU105334 other upstream 36985 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 290035 35865842 ~ 35888172 (+) False LOC120562279
TU105077 other upstream 769525 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 990008 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 1321675 34839157 ~ 34856532 (+) False LOC120562567
TU105369 other downstream 103572 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 201837 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 201837 36392252 ~ 36465230 (+) False LOC120563181
TU105437 other downstream 500978 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 736297 36926712 ~ 36928871 (+) False G78888

Expression Profile