RNA id: XM_039807363.1


Basic Information

Item Value
RNA id XM_039807363.1
length 1975
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC120563194
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21458499 ~ 21461211 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGAAAACTGCCACTGCTTCCATTGGAAGACTGAAACGAAGCTCCTTCGCATGTTTGCCAACCGGCTGCCAATTCGTCCGAGTCGCCACTAATTAGCCCCAGCTGTGCCTGCGTGCTGGTTTCACGTGCAGATTGAAAGGGAAAGGTAGAAGGACAGCAGTCTTTAGCGATGAAAATGTGGCGTCTCTATATTTTGTGCGGTGTTTTATCACTTTGCCTCCTCAGCTGTGCAATGGGCACTTATGAATCTCCACTTACCCgaagaaaaaaacttttcaaaCTGGGTACTCCGAAATCCCAATCAATTCAGCAGTCAAGAACAGACTATAGAAAATCCTCTCCGAGGTCAGGCCTACCTACCAGCATTTCTCCAGTGTCTCCACTGAGTTCCCAAAGGCCTTACCCTCCTCTGACCCCTCGACCCATGCGTCCATTGGAGCCCGAGGCAAAGATCCAGTCGGACTCTGCTTACCTCCCAGACGTTTCTGTAACCTGCTCCACGTCTGACGTTGTCGTGCGGGTCAAACCAGCTTTCTACGGTCTGGGCGCAGATACAGAGGAGCTGAAATtaggcagcaactgcaaaagcaaCGGGGTTCTCAGGCCGAACGGTGACCTGCTTTTCACGTATCCCCTGACAGCGTGTGATGCCGTGCGTGAGTCGCCCGACGGGTATCTGCTCTACAAATACGAGCTCCATTATGAGCCTTCTGGAGAGCGGTTTCCAAGGATGACTGTCGACATTGAATGCCGTTATCAAAgGAGCAACCATGTGCATCGTCTGATTGTGCGGCCCACCTGGGAAACTGCTGTTGTGCGTAAATGGCTGAAAGGAAGTCCAACTGACTTCCAGATAGAGTTGATGGATGATTCATGGAGCACACCTGCCGAGTCTCAGGTCTACCAGCTTGGAAAGACCGTTAATTTCGAGGTCTCTGCTCCTAATCTCTCAAATGGTGGAAAACTGTACATCAATACCTGCCATGCTACACCATCCAGTGGCTCTAAATCACATATACTCAAATACACAATCATTGACAATTTTGGCTGTTTGTTGGACAGCAAGAGCAACCCAGGGGCCTCTCAGTTCATCTCTCGGACAGACAATTCCCTAAGATTCTCCCTAAAGGCTTTCAAGTTTACTTCTGACCCTAACCCGGAGatCCGTATTGACTGCAGTTTGTTTGTTACACCTGAGGATGCAGGTCCTACACACAAATCGTGCACCTACGTAGGGAACGGGTGGAAGGCCCTCACTGGTGATGACTCCATATGTGAATGCTGTGATTCACAATGTGTGACCTCTAACCCCCAGAGGGCCATGATGGAAGGCTCTGCCAGCAGTGAGTCATTGTTGGTCTCTGATCGGCCATACACAGAAGATTCTTTCCTACCGGTCAGCATGAGCAGAGAAGGTGAGACCCCGTGGAAAAGTGCCGAAGTAGTAAAGTATGATGACAAAGTGCAAGATTATGAGCAGCAGCTTGAAGATGAAGAGGAAAGTGGGGTTGTCTCTGGAGTGATGATGGAGCCTGATTTAGAGGAGTTGGGTTTTAGGAGGAGGGTCTTagtggaggaggaagactgTAAAGTGAAGGATTCAAATCGGTTCCAAGAGGATGGGTCAGGGTATGTagtggagggggaggagggattTGAAGGAAGAGAAGATGAGATCCATTTGAATCCAAAGGAAGGCAAAGCATTGCGTCACTGGGGAGAGGTAGAGCCACTGGTCTCTGAAGGCAGGGAAGAAAACTGGAAGCATACAGATGGAGGTGAAGAGGATGACGGGACGACATCCTCTGAGGTGGAGTGGAAGACTGGTCTGGCAGATTTCAGAGACGATAGTGAGAGGACCTGGTATTTCACATGGAGGTAGCATTAGTTTAATGAATGTTCAGTACTCTGCTCAAAGACTAACTCTCTAACAACAgaacttatgacttttttcaataaaaacctgaacATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99494 lncRNA upstream 122806 21334669 ~ 21335693 (+) False LOC120563169
TU99367 lncRNA upstream 166119 21291042 ~ 21292380 (+) True G74288
TU99366 lncRNA upstream 168185 21289553 ~ 21290314 (+) True G74287
TU99365 lncRNA upstream 169124 21289171 ~ 21289375 (+) True G74286
TU99348 lncRNA upstream 214932 21243229 ~ 21243567 (+) True G74274
XR_005639855.1 lncRNA downstream 263737 21724948 ~ 21725705 (+) True LOC120562851
TU99850 lncRNA downstream 575067 22036278 ~ 22036659 (+) True G74673
TU99814 lncRNA downstream 622471 22083682 ~ 22084524 (+) False slc50a1
TU99858 lncRNA downstream 629409 22090620 ~ 22091916 (+) False slc50a1
TU99933 lncRNA downstream 654405 22115616 ~ 22116026 (+) True G74729
XM_039805134.1 mRNA upstream 42605 21405484 ~ 21415894 (+) False crot
XM_039805136.1 mRNA upstream 42605 21405651 ~ 21415894 (+) False crot
XM_039805135.1 mRNA upstream 42606 21405506 ~ 21415893 (+) False crot
XM_039805140.1 mRNA upstream 42622 21403035 ~ 21415877 (+) True crot
XM_039805137.1 mRNA upstream 45611 21405483 ~ 21412888 (+) False crot
XM_039805795.1 mRNA downstream 5858 21467069 ~ 21478945 (+) True rundc3b
XM_039805788.1 mRNA downstream 23838 21485049 ~ 21491551 (+) True dbf4
XM_039805782.1 mRNA downstream 32203 21493414 ~ 21556018 (+) True adam22
XM_039805783.1 mRNA downstream 32204 21493415 ~ 21556018 (+) False adam22
XM_039805784.1 mRNA downstream 32205 21493416 ~ 21556018 (+) False adam22
TU99513 other upstream 53896 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 447128 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 1808988 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 2299504 19148613 ~ 19158995 (+) False G73570
TU99582 other downstream 137844 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 308337 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 671367 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 676354 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 736583 22197794 ~ 22199818 (+) False kcnn3

Expression Profile