RNA id: XM_039807365.1


Basic Information

Item Value
RNA id XM_039807365.1
length 2565
RNA type mRNA
GC content 0.52
exon number 8
gene id rrnad1
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35043221 ~ 35058363 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGATACTATCTATTATAATGACTTAAAGGATCTGTTTTAACAACATTGGCGGAAATGGGCATCCATACCTGAATTAAACACACAATTTCTGCCATTTACTCGCCGCAGCCAGTCAACAAAAACATATCCATAAAACAACCACTAGCTAAATCAGAGACAGCTTAGAGAACCTTTGACTTAAGACGATATCGCTACCTTCTTAATTTGTGGTAATTGATTGAATGTTGATTTTACGAATATCGATTGTAAAGTCCGGGATCCGACCTACCGATGCGGAATTTACGTGAAGCACCTGAACGCACTCTAGCTGCATGTGAAAGCAActagctggctagctagctattgGCTAACTACAATTAACATTTGTGAAATGAAAAGCACGGGACTTTAAGTTACGTTACTGTGCGGGTTAGAACGTATTTTAGACACACTTCCGTGGTTTTAACTGGGAAAATAACTTTGCGTTTACAAGCTAACGTATGTTACCATTAGCTCATCTCCAAGTTCTATGTCAGTGaaactgctagctagctagcagcaaAGGCTTTGGAGATGTTTACATCCAGCCTTTCTACACAACAACAGAGGGACCTGGCGAAAAGACTCACCACTTTCCTGTCTCAGTACAGCCACGTATCCGACTCCTATATCATTGAGTTCTTCACTGAAGATCTCTGGCACACATTACCCAACACCTGGCAGCCTATGCTGCAGGACCTGTCGTATCCACAGATCGCAGACCTGTTACTGGATGCTGCACACAGAGACAAGAGATACCCTTCGGTGTGGCCTCTGTCGCTCTTGGCGTTCCGTGCCACAGCTCACGCTCTGGCGTTTCCCAGAGAGTGCAGGCGGGGGCGAGGCACGGCGGCCGGCTCGGAGAAGCCTGAGGAGTTCCTGCACAACCAAAGTCAGAGCGCCCTGCTGGGACACATATTCAGGAAACACGTCAAACCCAAGAAACAGCACGAGATCCGCAAGCTGGGCTCGCTGGTAAAACAACTTTGTGACCAGACTGACTGCAACAGTGTGGTGGATGTGGGCTCTGGACAGGGTCATCTGACTCGTTTCCTGTCCTTTGGGCTCGGACTGTCTGTGACCGCTATTGAGGCTGATCACACCCTGGTTGCTATGGCGTCCAAGTTTGATGGACAGTTACTGTGGGCCTTGGAGAAGGAAAGGCAGAAAAAGAACTGCTCCTCTCTGGTCCCGGTGTCACAGTCCTCTCCCCGCCATGTGGCCGGTTGGGTAAACCCCAGGGCATCATGGGAGGCCTTCATCAAGCAGCTGAGTGTTTCAGATTGTGTCGACGATGGTCTCCCAACTCCGTCTGGACCCAGCAAAAAGAGACTGCGGGGCTGTGAGCTTCAGGGGGCCTCTCACGTGGTCCAGACGCCGTCATGTCGTGTTTGCACGGACTCTGAAAGTCGCTCGCAGGACTCTGAATCGCCATCGCAACGCCAGTTAAGCAAAAGCGAGTCTGAAGAGGAGCCTTCTGCAGAAAAACACTGCTCGTGTGGAGAAAACAGCCAGCGGCATCAAGACTTTGTCCTCACCGGTCTCCACGCGTGCGGCGACCTCAGCGCCACACTCCTGCGCCACTTTGTCAGCTGCCCATACGTCCGCGGCATCACCTCGGTGGCGTGTTGCTACATGAAAATCACGACCAAAGAAAACCCCGCCCCTCCGGGATTGGTCGCAGCTCCGCAGACACCCGGCCGGGAAGCGCTCCCCTCAGAGTTCGGCTACCCGATGAGCTCCTGGGTTGGGGGGCTGCCGGGACACCAGCTGTCCTATAAGGCGAGGGAGGGCGCGTGTCACGCCGCTGAGGACTATAAACGGAGGCTTCGGGAGGAAAGCGAGCTGCTGAGGACACACTGTTACCGGGCGACGCTGGAGACGATCATCAGGGAAACGAGGCCAGATCTACGCAGGGCAGGAATCCAGACCATAAAGAAAGCCCACTTACTACCGTTTACAGAGTACGCCCGTCTGGGTCTGGCTCGGGTCGGCCTGCCTCCCGGGTTGCCTCTGGCCCCGCAGCGGGTGGAGGCCATGTTGAAGCAGCAGCGCAGGGTGGTGGTGTACTTCAGCCTGGCCCTGCTGCTGGCTCCTGTGGTGGAGACGCTGGTGCTGCTGGACCGGATGATCTACCTGCAGGAGAACGGCGTGGACAGTCAGCTGGTTCCTCTCTTTGACCCGAACTTTTCTCCAAGAAACTTTGTGCTGGTGGCTCTGAAGGCGCGTGGACAAGGAGGAGGCAAATGGGAAAAGTCAAACGATATTTGTCACTCTTTGGTGAGAAAAGTAACTTAAATTCCACAAGACGAGGCTGCGCTGCGCGCCCCAGAAGCAACTCTCTGCTCCGCAAAAAATGCTGCATGGCGGACAACGAGACAAAACCGGAACGCGGTGCATCTGCgcccggtggaatttccgggttacacttccttttttaaaatgaaatatgacTCAAGATTCTCTTACAAAACAAGGGATCCCAAGTCTTAAGGTCATTTGCTTTTATTCTCCGTTTTTAGAGATATTAAAGAATGAACATTAAA

Function

GO:

id name namespace
GO:0001510 RNA methylation biological_process
GO:0000154 rRNA modification biological_process
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104847 lncRNA upstream 12086 35030908 ~ 35031135 (+) True G78440
TU104755 lncRNA upstream 125152 34914357 ~ 34918069 (+) True G78366
TU104754 lncRNA upstream 186689 34844239 ~ 34856532 (+) True LOC120562567
XR_005639791.1 lncRNA upstream 186696 34839160 ~ 34856525 (+) False LOC120562567
TU104947 lncRNA downstream 110549 35168912 ~ 35173203 (+) True G78488
TU104979 lncRNA downstream 148568 35206931 ~ 35207166 (+) True G78516
TU104981 lncRNA downstream 172088 35230451 ~ 35230899 (+) True G78518
TU104982 lncRNA downstream 173783 35232146 ~ 35232446 (+) True G78519
TU104987 lncRNA downstream 181674 35240037 ~ 35240487 (+) True G78524
XM_039807294.1 mRNA upstream 78423 34952052 ~ 34964798 (+) False hapln2
XM_039807292.1 mRNA upstream 79087 34952052 ~ 34964134 (+) True hapln2
XM_039807293.1 mRNA upstream 79365 34952052 ~ 34963856 (+) False hapln2
XM_039804954.1 mRNA upstream 420638 34609910 ~ 34622583 (+) True nes
XM_039804950.1 mRNA upstream 602128 34419907 ~ 34441093 (+) True LOC120561733
XM_039807369.1 mRNA downstream 1096 35059459 ~ 35071390 (+) True LOC120563199
XM_039806534.1 mRNA downstream 61070 35119433 ~ 35127711 (+) True snrnp48
XM_039806533.1 mRNA downstream 70751 35129114 ~ 35168180 (+) True zgc:113232
XM_039806851.1 mRNA downstream 119045 35177408 ~ 35183557 (+) True cd83
XM_039806875.1 mRNA downstream 130320 35188683 ~ 35201394 (+) True c7h8orf37
TU104752 other upstream 186689 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 498842 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1007254 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 1138958 33894372 ~ 33904263 (+) False LOC120562157
TU104301 other upstream 1182109 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_361 other downstream 129755 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 347012 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 807479 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 1079396 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 1235624 36293987 ~ 36350995 (+) True G78772

Expression Profile