RNA id: XR_005639616.1


Basic Information

Item Value
RNA id XR_005639616.1
length 732
lncRNA type intronic
GC content 0.52
exon number 2
gene id LOC120561592
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41764801 ~ 41768650 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cggGCTGCAAGGAGAAGGTCAGTGATTGGCTGAAGGGAGAACACCCTGACAGTGGTCAGCATGGACGTAGGGCCTCATGTTGATCGAGGGGCTGCAGCTCGTCCTCGTCGTGCAGCTGTACGGCGCCGTCGGCAGGAAGACGGCAGCCAGGAAACGAGCCGTGGCCGATGAGCTGGACTACGGAGAGACGAACTACGCCTACAGCGATCCTCAGGATGGTTACACAGACCCCGCCCACCCTGCACATCACCATGACTACCCGAACTAGGAGTAAACATACCTGGAGAGGACCAATCAACGGGCTTCTTAAAGAAtcaataaagtcataaaatatgttgtgtagaagttaaatgttagagagaTCTCCCAATTcaggggcacacacacacacacggatgggGGGTAGCTAGATATCTGCGGGGCTAACGCTGGTACTGGCCCGTCCTGCTCAAAGAGCTAAAATACAAGGAACTACTTCTGGCTCTATATTTCGGTTGCTGTAGTTAACGATTTAATCACTACTGAGCTACAGCTGTCACGGTTGCTAGGTGACAGGAGTGGCGCTTTGACGCCAACAGGAAATGCTCTGCAGATCTGACCATCTCATTTCGGAGACCGCTCGGTTCAGCCTCCGTGGGATGTGAAGGCTGCGGCCCCTGACATGGGACACTTCTTCAGCGTATTCCCCCTGAACATACttcctgtttaaataaagtttcatGTTTCTAATTA

Function

GO:

id name namespace
GO:0006082 organic acid metabolic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639617.1 lncRNA upstream 47110 41711655 ~ 41717691 (+) True LOC120561593
TU107837 lncRNA upstream 67391 41656612 ~ 41697410 (+) False G80363
TU107829 lncRNA upstream 68006 41662566 ~ 41696795 (+) True G80363
TU107832 lncRNA upstream 68006 41679258 ~ 41696795 (+) False G80363
TU107828 lncRNA upstream 68006 41695788 ~ 41696795 (+) False G80363
TU107893 lncRNA downstream 110111 41878761 ~ 41879073 (+) True G80402
TU107896 lncRNA downstream 127268 41895918 ~ 41977583 (+) False G80405
TU107899 lncRNA downstream 127268 41895918 ~ 41989851 (+) True G80405
TU107900 lncRNA downstream 150817 41919467 ~ 42422688 (+) True G80406
TU107901 lncRNA downstream 158808 41927458 ~ 41927764 (+) True G80407
XM_039804729.1 mRNA upstream 71796 41682413 ~ 41693005 (+) True LOC120561589
XM_039804732.1 mRNA upstream 71796 41688511 ~ 41693005 (+) False LOC120561589
XM_039804730.1 mRNA upstream 76072 41684777 ~ 41688729 (+) False LOC120561589
XM_039806133.1 mRNA upstream 188298 41551091 ~ 41576503 (+) True LOC120562406
XM_039806121.1 mRNA upstream 219207 41541930 ~ 41545594 (+) False LOC120562396
XM_039806643.1 mRNA downstream 758846 42527496 ~ 42529482 (+) True LOC120562755
XM_039806644.1 mRNA downstream 764274 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA downstream 767042 42535692 ~ 42538282 (+) False LOC120562757
XM_039806658.1 mRNA downstream 867175 42635825 ~ 42643990 (+) True LOC120562767
XM_039806659.1 mRNA downstream 894868 42663518 ~ 42666003 (+) True LOC120562768
TU107784 other upstream 342223 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 342223 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 404595 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 582134 41156474 ~ 41182667 (+) False polr3glb
TU107913 other downstream 170848 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 234723 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 716685 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 764274 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 764770 42533420 ~ 42538282 (+) False LOC120562757

Expression Profile