RNA id: XR_005639637.1



Basic Information


Item Value
RNA id XR_005639637.1
length 645
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC120561704
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23331840 ~ 23332756 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAGCGAAGATGGATAGCTGGTCTTGAGATGACAGGCACGGCATCAGCGGGGCCGCACTTTGCTCAGGACAGGAGCCAAAGGCACGTAAACAGCAATGTGAAACAGAgaagcagagatggcaaaaacAGTTGTTTTTCTCCAAACATGACAAGCCCACGGCCATCTGCGACAGGCGGCGTGGGCCAACAGTGTTAGGAAGTGTGAGAAAGATTGTCAGAAGCATACTggctgctctcacacacaccaacagaccATCTCAGAGGCACAGATATAGATCTGCTAGCTAGAAGCAGCCAGGGATGCAGGACATTTTGACAAGACACAAGTAGGTCATTGTGGAGAGAATCAACGCACCCTGGAGAACCCAACCATGGTCAAGTTGAATGAAGTGCTTTTAGAAAGGAACTGTCACAACTCTAAATATGGATGTTCGTCAACACAATAAACCTGTGGTCTGCGGCACTGCCCCATATCATCGTCTGTACTGTGTGTACAACAGGAGATGATTAGGTACCCAGTCAAGGGAAAAACTTGAAATCGATGCTTCATTTCACTGACAATATTGTGAATCACAAAGATGATATTGTATAATGCTACATGTACATGCATGCTGCTTCATTAAAACGCATACGGTGGTCCTGCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100574 lncRNA upstream 3211 23328242 ~ 23328629 (+) True G75192
TU100533 lncRNA upstream 187675 23143942 ~ 23144165 (+) True G75155
TU100360 lncRNA upstream 248701 23079812 ~ 23083139 (+) False LOC120562293
TU100419 lncRNA upstream 313245 23016807 ~ 23018595 (+) True G75077
TU100410 lncRNA upstream 337134 22994420 ~ 22994706 (+) True G75069
TU100579 lncRNA downstream 7090 23339846 ~ 23342677 (+) False G75196
TU100578 lncRNA downstream 7336 23340092 ~ 23342677 (+) True G75196
TU100582 lncRNA downstream 14084 23346840 ~ 23350767 (+) True G75197
TU100585 lncRNA downstream 18389 23351145 ~ 23354175 (+) True G75199
TU100617 lncRNA downstream 104340 23437096 ~ 23441226 (+) True G75227
XM_039806973.1 mRNA upstream 9079 23304312 ~ 23322761 (+) True cacng8b
XM_039805227.1 mRNA downstream 45849 23378605 ~ 23382673 (+) True rcvrn2
XM_039805226.1 mRNA downstream 60243 23392999 ~ 23395671 (+) False isoc2
XM_039805225.1 mRNA downstream 60247 23393003 ~ 23395671 (+) True isoc2
XM_039805932.1 mRNA downstream 63178 23395934 ~ 23401710 (+) True foxj2
XM_039806510.1 mRNA downstream 87591 23420347 ~ 23426645 (+) True sbk3
TU100365 other upstream 429792 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 511787 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 664296 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 708756 22616972 ~ 22623084 (+) False arnt
TU100710 other downstream 158369 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 431559 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 434429 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 435477 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 541160 23873916 ~ 23879415 (+) False LOC120563047

Expression Profile