RNA id: XR_005639642.1


Basic Information

Item Value
RNA id XR_005639642.1
length 817
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id LOC120561759
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34249029 ~ 34251208 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGCTCTGCACCTGGCGGGACGAGCAGCACAGGTATCGGCAGCAGACGGTACCCTGTCCTAGAAGCAACCTTACTCCAAGTGGAATGATTCTTGTGGTGTGAGGATGCTGTGGAAGTGTGTTCATGGAGAACCTCAAGAACCTCAAGCAGGAATTCTATGAGAGCATCGATTGGCACAGTCCTCGTCTCCTCGAGTTATTTCGATCCAAGAGAGGTGTTGGACAGTTGTTGACACATATTTCACAACAGACCAATACTACAGAGCCAACTGCCATCCAGACACAGGTGCTCAGAGGGCTTCCTATCATCCTTGGGGACAAACTCACAAACTTCTTCAAATAAAAGCAGGCTTTGAATCGGATGATGATGATTCTTCTCGTGACCTTGACATTGGGATACTTCTCATTGAGTGTGAAGGTGCTGGGCTCACATCTTCCCAGCATCTCAGTCCAGCCTTGTTGAAAATCATCATTGAGGGAGAAGTCGTGATGGACAACATTCAAGATCTGCCAAAAGCATTGGGCATTCTGTTTGGACTCACGTATGCACTCCATCTTAACAACCCCAAGACTATGGAGCTCACATTTCAGGTCATCCAACAGGTATTGCTCTTGTTAGACCGCACTGACCTAAAGCCGAAgctacagactttgaaaaatcAGCTCGCAATGTACATTTGAGTGGGGATTTCTTGTCAATTTTGTTTTGTATATGgatttaccactttaatctcaggggacatccatgtttttttcttgtaaatttGTGACACATTCAACACCCACACAagaacaacacaaacacggacaacacccac

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104434 lncRNA upstream 195293 34048440 ~ 34053736 (+) True G78134
TU104431 lncRNA upstream 206396 34038841 ~ 34042633 (+) False sh3bp5b
XR_005639657.1 lncRNA upstream 261042 33984849 ~ 33987987 (+) True LOC120561795
TU104416 lncRNA upstream 285937 33962794 ~ 33963092 (+) True G78117
TU104337 lncRNA upstream 298024 33950773 ~ 33951005 (+) True G78055
XR_005639645.1 lncRNA downstream 39554 34290762 ~ 34294584 (+) True LOC120561762
TU104487 lncRNA downstream 65603 34316811 ~ 34323014 (+) False G78180
TU104490 lncRNA downstream 65603 34316811 ~ 34324359 (+) True G78180
TU104495 lncRNA downstream 65603 34316811 ~ 34323014 (+) False G78180
TU104500 lncRNA downstream 91306 34342514 ~ 34345393 (+) True LOC120561758
XM_039806542.1 mRNA upstream 160283 34084095 ~ 34088746 (+) True LOC120562692
XM_039806163.1 mRNA upstream 206381 33990542 ~ 34042648 (+) True sh3bp5b
XM_039806470.1 mRNA upstream 313086 33922578 ~ 33935943 (+) True LOC120562646
XM_039806471.1 mRNA upstream 313086 33922583 ~ 33935943 (+) False LOC120562646
XM_039806468.1 mRNA upstream 329854 33916999 ~ 33919175 (+) True LOC120562644
XM_039804950.1 mRNA downstream 168699 34419907 ~ 34441093 (+) True LOC120561733
XM_039804952.1 mRNA downstream 168699 34419907 ~ 34441093 (+) False LOC120561733
XM_039804951.1 mRNA downstream 169600 34420808 ~ 34441093 (+) False LOC120561733
XM_039804954.1 mRNA downstream 358702 34609910 ~ 34622583 (+) True nes
XM_039807294.1 mRNA downstream 700844 34952052 ~ 34964798 (+) False hapln2
TU104420 other upstream 213062 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 344766 33894372 ~ 33904263 (+) False LOC120562157
TU104301 other upstream 387917 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_357 other upstream 617316 33631642 ~ 33631713 (+) True trnap-agg_5
unassigned_transcript_356 other upstream 617919 33631039 ~ 33631110 (+) True trnap-agg_4
TU104540 other downstream 278147 34529355 ~ 34544379 (+) False G78200
TU104752 other downstream 587949 34839157 ~ 34856532 (+) False LOC120562567
unassigned_transcript_361 other downstream 936910 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 1154167 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 1614634 35865842 ~ 35888172 (+) False LOC120562279

Expression Profile