RNA id: XR_005639658.1


Basic Information

Item Value
RNA id XR_005639658.1
length 258
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id LOC120561796
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 7656163 ~ 7660085 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACCGCGAGAGCGCGCACAACGAAACGACAGTTTACAGTGATTCAGGTTTTTTACCCGTGGCTTTTACTCCACTAAAGAGGAAAATGCCATTTACTTTTGCCCAGTCTGTGCAAAAGTGGCTGCGCTATGCGCCAGACCGGGCAGGAGGGACTGGACGACAAACCAATCAGACGTCAGAGGACCATGAACTGTAAATTTGCTAAAGaggacaaataatgaaataagaggctaataaaatgaatttgtttttcCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95098 lncRNA upstream 88749 7567107 ~ 7567414 (+) True G71091
TU95097 lncRNA upstream 96764 7542449 ~ 7559399 (+) True G71090
XR_005639713.1 lncRNA upstream 117921 7537628 ~ 7538242 (+) True LOC120562239
TU95087 lncRNA upstream 134783 7515431 ~ 7521380 (+) False G71082
TU95080 lncRNA upstream 136122 7513576 ~ 7520041 (+) True G71081
TU95173 lncRNA downstream 82547 7742632 ~ 7744001 (+) True G71150
TU95171 lncRNA downstream 136256 7796341 ~ 7802015 (+) True G71148
TU95205 lncRNA downstream 211432 7871517 ~ 7873393 (+) True G71176
TU95206 lncRNA downstream 211432 7871517 ~ 7875600 (+) False G71176
TU95242 lncRNA downstream 312777 7972862 ~ 7980906 (+) True G71204
XM_039806230.1 mRNA upstream 155981 7456779 ~ 7500182 (+) True znrf2b
XM_039806231.1 mRNA upstream 172555 7456767 ~ 7483608 (+) False znrf2b
XM_039805594.1 mRNA upstream 357921 7295946 ~ 7298242 (+) True fzd1
XM_039805599.1 mRNA upstream 363728 7094304 ~ 7292435 (+) False cdk14
XM_039805052.1 mRNA downstream 5153 7665238 ~ 7707591 (+) True LOC120561797
XM_039805054.1 mRNA downstream 71741 7731826 ~ 7741034 (+) True LOC120561799
XM_039805059.1 mRNA downstream 107674 7767759 ~ 7783482 (+) False rbm42
XM_039805058.1 mRNA downstream 109705 7769790 ~ 7783482 (+) True rbm42
XM_039807228.1 mRNA downstream 225612 7885697 ~ 7904575 (+) True LOC120563115
TU94835 other upstream 1695309 5960455 ~ 5960854 (+) True G70894
XR_005639717.1 other upstream 2063114 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 2238242 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 2990057 4665784 ~ 4666106 (+) True G70654
unassigned_transcript_306 other upstream 3542882 4113209 ~ 4113281 (+) True trnar-ucg_13
TU95170 other downstream 70937 7731022 ~ 7801380 (+) True G71147
TU95377 other downstream 461516 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 623296 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 623296 8283381 ~ 8309744 (+) False ano10a
TU95565 other downstream 1088858 8748943 ~ 8751443 (+) True G71470

Expression Profile