RNA id: XR_005639733.1


Basic Information

Item Value
RNA id XR_005639733.1
length 1835
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC120562289
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24468834 ~ 24488842 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tCCTCTTTGGTACCCTTCCCATCCATCAGTACACCCCTGCCTATGCTGACTTTGCAATATACTTTAAGATGCCTACTAAATAAATGTCTTGATCAATAAATACGATCTGGGGATCGAGCAGGAGTTGTAACTCTCTCTAATGGTTGTATATGTATTGATCGAAGGAGTGTTACATTAGTATGGTGGGAATGCACACACTGTCAATGGAGTACTCAGACGTAAAGATAGGCAAAGAGGAGGAGTTCAGTTTAAAGTATTTTTGAGAATCAAATGGAGTTGAACAGAATAGAACAAATTCTTGAAGGGAAACTGTTCTCACGCTTTGCCATCTTCTCTTTAAACTAGCAGTGATCTGTGCAGTTGCAGCATTATGGGATTAACAGACTTTGTGAATTGGCAGCCAGGTAATGAGTGAAGGAGAAGGCAGAGAATAAACCTTGCATGCCTTCAGTGCTGCTAAGCTGGTTAAAAATAGAGGCAGAAGAGAGGGATCGAGCGAATCGGCATGGAAAGAAAAGATGGGGGATGGAggaaacagctgatttgattccTGCAAAGAAGCCACCAGCGACCTGATGGAGAAAATCTGCCCAGGCTCATCATGTGTATGACAATGATGAGCATGTTTGGCTGCATGCTGTTGGCTTGGTTGGCCAGAAGGACAAACTGTGTGAGAGGAGAGCAAGAGGACGAGGGGGGCACGAACACTGGCACCATGtTGCCAATTATCTGCCTGTACGTTCACTCCTTCTCCACACACCAATGGATTTTGATTTCAGACAAACCTATTCCATTATAtttgtggtggaatttccaTCTTACGAACTCATGCTAAGTTGAGACAGTGGTACCCCAGGTCTCATTCAAGTCATTGTCCAACATAACCTCATAACCTTTCCAGGCAGAGAAGTACTTCAACTTTGTGCCTCTATGGATTCAGGGTATCTAGGCAGCTGCATGATAAGGGAATGTTTTGTTTCAGTACAGTCTCCTTTTGGAGGTCGTTGGGCCTGCCACACTTTTgcatacttcccagagagagaccATCTGTGTTTTAGGCGCCTGCgatatctttgtttacattgaagGTTCAGCTAAACTTAACGCCTTTAGCATGcgtttaaatacaccttcaggaagacaggaacttcagagagtcGGGATGGCACTTACACTGCACTGTGTAATCCTAAACTCTCCTCAATTGAGAattcattaaatgcttctgtgtcAGTAATCAAAGTCTCCCGGACATTCTTAACATATGTGaaaatgagttgtgctgctcctttttttttaagtttttatattttttaatattgacAAATTGTTGTTTTCCCTTCGGTTTTTTTGCATTCCATTTGTGAATACAGATTCTACCCTGCATCTCTCCTCTCTTGCCCTTTGCCACACATCTCCCGTTTCATGACTGAACCGTCATTGACAGTCATGTGTCACTGTTTCCAGGCCAAATCCCAGAGGAATTTTCCACCACCCACCTGGCTCTTTCCTCCTTTCATCTCTGTCTTATTGCTTGTTCTCTTCATCCACTTTCTTCTCACGCCTATTTTTTGTCATCTCTTTAATCCCATCTGACTTCCCTTCATCTATCCCCTGAGATCTCAGCACTATCCTCTTTTTGTTCCtgtcactctttctctctctcctcctctccccttttctctctgtctctgcctcttTTCCACCCTTCTGGACACTGTGAGTAGAACACAGATTATGTCAGACATTTATAAAACCAGATTAGCTGGATGATCACCTTCatgcgctcacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101174 lncRNA upstream 172111 24295838 ~ 24296723 (+) True G75622
TU101154 lncRNA upstream 252265 24216140 ~ 24216569 (+) True G75611
TU101108 lncRNA upstream 343753 24122027 ~ 24125081 (+) True G75583
TU101106 lncRNA upstream 346825 24119317 ~ 24122009 (+) True G75582
TU101028 lncRNA upstream 395190 24073389 ~ 24073644 (+) False lpcat3
TU101229 lncRNA downstream 31923 24520765 ~ 24534169 (+) True dedd1
TU101237 lncRNA downstream 31923 24520765 ~ 24534169 (+) False dedd1
TU101238 lncRNA downstream 31923 24520765 ~ 24534169 (+) False dedd1
TU101425 lncRNA downstream 311399 24800241 ~ 24804853 (+) True G75798
TU101430 lncRNA downstream 334184 24823026 ~ 24824765 (+) True G75803
XM_039805942.1 mRNA upstream 2816 24387917 ~ 24466018 (+) True si:ch73-22o12.1
XM_039805943.1 mRNA upstream 2816 24387918 ~ 24466018 (+) False si:ch73-22o12.1
XM_039805940.1 mRNA upstream 35406 24387915 ~ 24433428 (+) False si:ch73-22o12.1
XM_039805662.1 mRNA upstream 103251 24351568 ~ 24365583 (+) True vars1
XM_039805663.1 mRNA upstream 103251 24354816 ~ 24365583 (+) False vars1
XM_039805938.1 mRNA downstream 4073 24492915 ~ 24514355 (+) True atp1a3b
XM_039805939.1 mRNA downstream 4073 24492915 ~ 24514355 (+) False atp1a3b
XM_039805271.1 mRNA downstream 31893 24520735 ~ 24534276 (+) False dedd1
XM_039805272.1 mRNA downstream 31893 24520735 ~ 24534276 (+) False dedd1
XM_039806812.1 mRNA downstream 71223 24560065 ~ 24598707 (+) True pou2f2a
TU101208 other upstream 32015 24435139 ~ 24436819 (+) True G75644
TU101207 other upstream 32064 24435139 ~ 24436770 (+) False G75644
XR_005639925.1 other upstream 414506 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 436389 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 589419 23873916 ~ 23879415 (+) False LOC120563047
TU101448 other downstream 426412 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 1002972 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 1013758 25502600 ~ 25504052 (+) True apoc2
TU101929 other downstream 1651059 26139901 ~ 26142627 (+) True G76192
TU102095 other downstream 2319276 26808118 ~ 26815391 (+) True G76315

Expression Profile