RNA id: XR_005639757.1


Basic Information

Item Value
RNA id XR_005639757.1
length 396
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id LOC120562367
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39723490 ~ 39723984 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgttgtctgtgtctgtctacaTGTCACTCAAGAGGATCTAGGTCAAGGGGCGTGGCCACTCTCACCTGCTCTGCTCCAGCCAGCTGCAGCTCATTCCAGTACTCAACCAACAGTTATCTACCCGGGCTGTTCACCTCTTCAGCGCCAGTTCGTTGCAACCATTCCTGTGATCCCGCCTCTGGACCTGCTGCTTTTCGGTTCTCATCTGCCTCCTCGCTGCCTGCTCACCTCGCAACTCCGTTCTCAACCAGCCTTTCCACCCAGCTCTCGTCTTCGCTGCCTGGCCACACACCCGCCGTCTGATCTCCAGCTTCGACTCCACCTGGAGCTGCTCTCCTGGCCATTCCCTCCTGCACTATCCACATTGTGTCCAATAAAACACTGCTAACCGct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639758.1 lncRNA upstream 4651 39714930 ~ 39718839 (+) True LOC120562368
TU107059 lncRNA upstream 48173 39674723 ~ 39675317 (+) True G79913
TU107056 lncRNA upstream 66688 39656400 ~ 39656802 (+) True G79911
XR_005639756.1 lncRNA upstream 135008 39574338 ~ 39588482 (+) True LOC120562366
TU107047 lncRNA upstream 147818 39559108 ~ 39575672 (+) False G79903
TU107086 lncRNA downstream 37275 39761259 ~ 39779865 (+) True G79923
TU107044 lncRNA downstream 42285 39766269 ~ 39767123 (+) False LOC120562364
TU107067 lncRNA downstream 66586 39790570 ~ 39794567 (+) True G79919
TU107075 lncRNA downstream 67703 39791687 ~ 39848872 (+) False G79922
TU107081 lncRNA downstream 79456 39803440 ~ 39918554 (+) False G79922
XM_039807012.1 mRNA upstream 296370 39425328 ~ 39427120 (+) True LOC120563008
XM_039807014.1 mRNA upstream 296370 39425328 ~ 39427120 (+) False LOC120563008
XM_039807013.1 mRNA upstream 296370 39425328 ~ 39427120 (+) False LOC120563008
XM_039807020.1 mRNA upstream 303817 39391948 ~ 39419673 (+) True LOC120563011
XM_039807030.1 mRNA upstream 391974 39321630 ~ 39331516 (+) True LOC120563019
XM_039806080.1 mRNA downstream 41189 39765173 ~ 39771420 (+) True LOC120562364
XM_039806203.1 mRNA downstream 57252 39781236 ~ 39803887 (+) True LOC120562494
XM_039806074.1 mRNA downstream 87871 39811855 ~ 39828704 (+) True LOC120562359
XM_039806205.1 mRNA downstream 200341 39924325 ~ 39979365 (+) True LOC120562496
XM_039806075.1 mRNA downstream 359046 40083030 ~ 40093260 (+) True LOC120562361
TU106769 other upstream 259649 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 269198 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 269198 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 402165 39313989 ~ 39321325 (+) False LOC120563015
TU106594 other upstream 419420 39302039 ~ 39304070 (+) True dcst2
TU107036 other downstream 43943 39767927 ~ 39768850 (+) False LOC120562364
TU107204 other downstream 592755 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 610378 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 693094 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 695885 40419869 ~ 40420429 (+) False LOC120562499

Expression Profile