RNA id: XR_005639758.1


Basic Information

Item Value
RNA id XR_005639758.1
length 672
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC120562368
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39714930 ~ 39718839 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATTCTTCATCGTGTCAGAGttctgctcttcttcttcttcttttttaacatttctaAATTTTTGGACCTTCGTACCTGAAACTTTCTCCACCAACTCTCCGGTATCTCTCCTACTGCTGACTCTAGAActcatctctctcctgtcattcagATCAACATGAAGATCTCTATCTTTGCTGGTGTTCTGCTGATCTCTGCTGCTCTGATGTTCCTGGGACCATAACCTTCAGATGCTCAGTCCTTTGATGCTAGGCACACCTACCATAAGATGACTGCTGCCCAATGTACCGATgtgataaaagaaagaaaaatcaatgAGGAAAACAAAGTCTGCAAGAGTACCAATACCTTCTTGAATGGTAACAATGCGTATTCCACCGGAACAATCTGTCGTAGTAGAGAAGGAGGGGAGGTGTGGAAACAAAACCCCAGTCTTAGAATTAGCAACGAAATTTACCCAATTATTGAATGTATTTGGGATAGAGTTTCCAGGTATCCCAACTGTAAGTACACAGGTACAGCTTATACCGACAGGAGACTTATAGTCAAATGTGACAACAACAATGAACCTTTTCACATTGAAGGTAGTGAAAAGGTTCAACCACCACCTGTTATCCCTCCAATATCTgggtaatctgttactacctgatgaatcagagtaatctgttacta

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0004518 nuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107059 lncRNA upstream 39613 39674723 ~ 39675317 (+) True G79913
TU107056 lncRNA upstream 58128 39656400 ~ 39656802 (+) True G79911
XR_005639756.1 lncRNA upstream 126448 39574338 ~ 39588482 (+) True LOC120562366
TU107047 lncRNA upstream 139258 39559108 ~ 39575672 (+) False G79903
XR_005639757.1 lncRNA downstream 4651 39723490 ~ 39723984 (+) True LOC120562367
TU107086 lncRNA downstream 42420 39761259 ~ 39779865 (+) True G79923
TU107044 lncRNA downstream 47430 39766269 ~ 39767123 (+) False LOC120562364
TU107067 lncRNA downstream 71731 39790570 ~ 39794567 (+) True G79919
TU107075 lncRNA downstream 72848 39791687 ~ 39848872 (+) False G79922
XM_039807012.1 mRNA upstream 287810 39425328 ~ 39427120 (+) True LOC120563008
XM_039807014.1 mRNA upstream 287810 39425328 ~ 39427120 (+) False LOC120563008
XM_039807013.1 mRNA upstream 287810 39425328 ~ 39427120 (+) False LOC120563008
XM_039807020.1 mRNA upstream 295257 39391948 ~ 39419673 (+) True LOC120563011
XM_039807030.1 mRNA upstream 383414 39321630 ~ 39331516 (+) True LOC120563019
XM_039806080.1 mRNA downstream 46334 39765173 ~ 39771420 (+) True LOC120562364
XM_039806203.1 mRNA downstream 62397 39781236 ~ 39803887 (+) True LOC120562494
XM_039806074.1 mRNA downstream 93016 39811855 ~ 39828704 (+) True LOC120562359
XM_039806205.1 mRNA downstream 205486 39924325 ~ 39979365 (+) True LOC120562496
XM_039806075.1 mRNA downstream 364191 40083030 ~ 40093260 (+) True LOC120562361
TU106769 other upstream 251089 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 260638 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 260638 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 393605 39313989 ~ 39321325 (+) False LOC120563015
TU106594 other upstream 410860 39302039 ~ 39304070 (+) True dcst2
TU107036 other downstream 49088 39767927 ~ 39768850 (+) False LOC120562364
TU107204 other downstream 597900 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 615523 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 698239 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 701030 40419869 ~ 40420429 (+) False LOC120562499

Expression Profile