RNA id: XR_005639779.1


Basic Information

Item Value
RNA id XR_005639779.1
length 155
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id LOC120562412
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41135950 ~ 41136174 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctaccaGAAATGTTTAAGACTCTGGAGAGAGCTGACACAGGGAAGATTGAGCTGGATATGCAACAGTGGCTGTGCCTGGCCATCTTCTGACTCTGGAGACAAGACAAGAGAGATGATACCTGCTGGAGGATTAACAATACATGCATTGAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107662 lncRNA upstream 28224 41068184 ~ 41107726 (+) True G80265
XR_005639774.1 lncRNA upstream 44036 41091477 ~ 41091914 (+) True LOC120562408
TU107680 lncRNA upstream 90558 41044777 ~ 41045392 (+) True G80280
XR_005639784.1 lncRNA upstream 154323 40979110 ~ 40981627 (+) True LOC120562417
TU107669 lncRNA upstream 168134 40967350 ~ 40967816 (+) True G80271
TU107725 lncRNA downstream 79347 41215521 ~ 41474414 (+) True G80299
TU107739 lncRNA downstream 177537 41313711 ~ 41347897 (+) True G80306
TU107752 lncRNA downstream 212408 41348582 ~ 41402166 (+) False G80318
TU107758 lncRNA downstream 224285 41360459 ~ 41362553 (+) True G80321
TU107761 lncRNA downstream 226505 41362679 ~ 41363468 (+) True G80322
XM_039806128.1 mRNA upstream 32167 41102048 ~ 41103783 (+) True LOC120562401
XM_039806126.1 mRNA upstream 123331 41010354 ~ 41012619 (+) False LOC120562400
XM_039806129.1 mRNA upstream 228114 40907328 ~ 40907836 (+) True LOC120562402
XM_039806132.1 mRNA upstream 298872 40830512 ~ 40837078 (+) True LOC120562405
XM_039806209.1 mRNA upstream 475636 40655512 ~ 40660314 (+) True LOC120562500
XM_039806123.1 mRNA downstream 11690 41147864 ~ 41150002 (+) True LOC120562397
XM_039806109.1 mRNA downstream 27569 41163743 ~ 41174846 (+) True LOC120562391
XM_039806110.1 mRNA downstream 27569 41163743 ~ 41174846 (+) False LOC120562391
XM_039806111.1 mRNA downstream 27569 41163743 ~ 41174846 (+) False LOC120562391
XM_039806134.1 mRNA downstream 40362 41176536 ~ 41186945 (+) True polr3glb
XR_005639771.1 other upstream 123331 41007967 ~ 41012619 (+) True LOC120562400
XR_005639770.1 other upstream 479383 40645659 ~ 40656567 (+) True LOC120562387
TU107236 other upstream 715521 40417078 ~ 40420429 (+) False LOC120562499
TU107703 other downstream 20300 41156474 ~ 41163694 (+) False polr3glb
TU107708 other downstream 20300 41156474 ~ 41182667 (+) False polr3glb
TU107699 other downstream 40555 41176729 ~ 41182667 (+) False polr3glb
TU107756 other downstream 220306 41356480 ~ 41360206 (+) True G80320
TU107784 other downstream 285182 41421356 ~ 41422578 (+) True G80337

Expression Profile