RNA id: XR_005639788.1


Basic Information

Item Value
RNA id XR_005639788.1
length 321
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120562422
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41529063 ~ 41530064 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCGCTAGATGGAGCACTGCTTCGGGTTCTCACAcgagttaaaaaaaagattgagaaGAAAAGAAGTTGGAGAACCATCCAGAAATCTCTTTTATTTGTCCTGGATTCTCATACTGGAAATCCTTTATTGGTCAGGTCTTTTCATGAGGCGAGCAGAAGTCCCAAAAGCTCCAGTCCTTGAATCATACCAGGTGAACTATTGATCCATAGATGGCGAGCCTTCCAAGGAACAGTGAACCTCCACCACAGCATTCCGGAAGCCTGTGGTAGGGTTGTGTCAGTTGAACAAAGTATAGTTGAACAAACTATACTACCATAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107808 lncRNA upstream 25823 41502345 ~ 41503240 (+) True G80351
TU107804 lncRNA upstream 36410 41491844 ~ 41492653 (+) True G80348
TU107800 lncRNA upstream 42994 41484572 ~ 41486069 (+) True G80346
TU107785 lncRNA upstream 72705 41421959 ~ 41456358 (+) False G80337
TU107790 lncRNA upstream 95516 41433046 ~ 41433547 (+) True G80339
XR_005639786.1 lncRNA downstream 8946 41539010 ~ 41539592 (+) True LOC120562420
TU107841 lncRNA downstream 84036 41614100 ~ 41615261 (+) True G80364
TU107842 lncRNA downstream 86845 41616909 ~ 41617366 (+) True G80365
TU107834 lncRNA downstream 108074 41638138 ~ 41680108 (+) False G80363
TU107836 lncRNA downstream 108074 41638138 ~ 41696795 (+) False G80363
XM_039806131.1 mRNA upstream 27404 41500185 ~ 41501659 (+) True LOC120562404
XM_039806104.1 mRNA upstream 141734 41377447 ~ 41387329 (+) True LOC120562389
XM_039806106.1 mRNA upstream 209359 41239083 ~ 41319704 (+) True LOC120562390
XM_039806120.1 mRNA downstream 11026 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA downstream 11866 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA downstream 11866 41541930 ~ 41545594 (+) False LOC120562396
XM_039806115.1 mRNA downstream 11866 41541930 ~ 41545594 (+) False LOC120562396
XM_039806118.1 mRNA downstream 11866 41541930 ~ 41545594 (+) False LOC120562396
TU107784 other upstream 106485 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 106485 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 168857 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 346396 41156474 ~ 41182667 (+) False polr3glb
TU107913 other downstream 409434 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 473309 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 955271 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 1002860 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 1003356 42533420 ~ 42538282 (+) False LOC120562757

Expression Profile