RNA id: XR_005639800.1


Basic Information

Item Value
RNA id XR_005639800.1
length 567
lncRNA type inter_gene
GC content 0.49
exon number 7
gene id LOC120562630
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19148521 ~ 19158369 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACTCACACCAGCACCCAGccccccacctcctccctccctctctctctctctctctctctctctctctctctctctctctcgctctctcattCCTGAGGCAAGACCTGGAAGACCAAGGAGGAACAGAGCTTACTTTGGTGCAACCGAAGTACTGAAGAATCTCCACAGATTAATTCCCTATTAATCActgcttttcattttatttgcaAGCTATAAGAGAAGATTTTGCACatcatatttttctcctggCTTAAGTAGCTAACGAGTGGAAAACTTTTCTAGCAAAGTTCAGCTCTCTGGCGCTGAGAAAGTCGCATTAGTTTATAGGAGGCTGATACACGCAGGTACAATGGATCTTGTGGTGTTGGTGGCGTTCGGCTCCTGGCTGGCTCCTGCACTCGGATCAGCGTTTGGCAGGGAGTTGCCTCAGTGGCAGATGACGAGGACAAAGACTATGACAGTGCTTTTCATTACGATTATGAATCGCTGAGAATCGGTGGCCTGGTATTCGCAGTGGTGCTGTTCTTCATGGGCATCGCTCTCATTGTCACCCGAAAATGTACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98334 lncRNA upstream 22673 19125156 ~ 19125848 (+) True G73568
TU98243 lncRNA upstream 216348 18911394 ~ 18932173 (+) True G73501
TU98239 lncRNA upstream 237305 18908503 ~ 18911216 (+) True G73499
TU98232 lncRNA upstream 274564 18872374 ~ 18873957 (+) True G73493
TU98215 lncRNA upstream 286683 18860328 ~ 18861838 (+) False kmt2bb
XR_005639798.1 lncRNA downstream 106 19158475 ~ 19159018 (+) True LOC120562629
XR_005639802.1 lncRNA downstream 1095 19159464 ~ 19162804 (+) True LOC120562631
TU98344 lncRNA downstream 1412 19159781 ~ 19162788 (+) False LOC120562631
XR_005639801.1 lncRNA downstream 2452 19160821 ~ 19162804 (+) False LOC120562631
TU98350 lncRNA downstream 31651 19190020 ~ 19191619 (+) False hcst
XM_039806430.1 mRNA upstream 728 19129524 ~ 19147793 (+) False LOC120562624
XM_039806431.1 mRNA upstream 728 19129594 ~ 19147793 (+) False LOC120562624
XM_039806432.1 mRNA upstream 728 19131491 ~ 19147793 (+) True LOC120562624
XM_039805285.1 mRNA upstream 27820 19116593 ~ 19120701 (+) True LOC120561940
XM_039806433.1 mRNA upstream 47447 19095468 ~ 19101074 (+) True fxyd5
XM_039804865.1 mRNA downstream 31710 19190079 ~ 19192102 (+) True hcst
XM_039804867.1 mRNA downstream 31731 19190100 ~ 19192102 (+) False hcst
XM_039804866.1 mRNA downstream 31732 19190101 ~ 19192102 (+) False hcst
XM_039806478.1 mRNA downstream 35106 19193475 ~ 19194806 (+) True LOC120562651
XM_039806917.1 mRNA downstream 40151 19198520 ~ 19204699 (+) True LOC120562955
TU98057 other upstream 401846 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 494884 18652411 ~ 18653637 (+) False LOC120562819
XR_005639844.1 other upstream 511214 18632402 ~ 18637307 (+) True LOC120562796
TU98645 other downstream 488606 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 1849664 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2244758 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 2440686 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 2611179 21769548 ~ 21770286 (+) True G74633

Expression Profile