RNA id: XR_005639810.1


Basic Information

Item Value
RNA id XR_005639810.1
length 398
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC120562701
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19614503 ~ 19625611 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAGAACAGATGttagtatttttaaaaaaacgtcACGTGAAACGAGCAGATGTTCAGACTGTGCAGAGACTCGCCGTGCAGCGCAttactgcagagagagagagagctcggAGGAGCTTTGCTTCCACACAGACTGTGAGTCTGCAGTCCTACATTAAAATCATCCAGCAGGTTTGATTAAAATGGATTAATAAAAAGGGCCACCTGCAGGGAGTAACAGGATCTGGAGCTGACTGTACGCGCTGAGACAAAGCAGGAGCGTCGGTGCCTTATCACACGAGGCGTCAGGATCCTTCAGTCCACCGACAGAGGAGCCACCTGGTCAGATGACCACAACCATgacatcaacaacaacagcaacaatatgaaaaacaaGTGACTGACACTGAGTGACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639814.1 lncRNA upstream 157887 19453769 ~ 19456616 (+) True LOC120562732
TU98557 lncRNA upstream 162323 19451783 ~ 19452180 (+) False si:ch211-254p10.2
TU98410 lncRNA upstream 294455 19319438 ~ 19320048 (+) True G73606
TU98390 lncRNA upstream 337987 19272727 ~ 19276516 (+) True G73586
TU98350 lncRNA upstream 422884 19190020 ~ 19191619 (+) False hcst
TU98640 lncRNA downstream 9262 19634873 ~ 19639459 (+) True G73776
TU98641 lncRNA downstream 9262 19634873 ~ 19636882 (+) False G73776
TU98646 lncRNA downstream 21364 19646975 ~ 19648907 (+) False G73779
TU98714 lncRNA downstream 194624 19820235 ~ 19820591 (+) True G73836
TU98764 lncRNA downstream 393498 20019109 ~ 20052006 (+) True G73871
XM_039804886.1 mRNA upstream 1351 19611746 ~ 19613152 (+) True twist1b
XM_039806840.1 mRNA upstream 19148 19590103 ~ 19595355 (+) True macc1
XM_039806839.1 mRNA upstream 19148 19591212 ~ 19595355 (+) False macc1
XM_039806843.1 mRNA upstream 31749 19577552 ~ 19582754 (+) False sp8b
XM_039806841.1 mRNA upstream 31749 19579729 ~ 19582754 (+) False sp8b
XM_039805072.1 mRNA downstream 49532 19675143 ~ 19693798 (+) True ankrd28b
XM_039806492.1 mRNA downstream 69304 19694915 ~ 19700987 (+) True hacl1
XM_039806493.1 mRNA downstream 75469 19701080 ~ 19710338 (+) True colq
XM_039806494.1 mRNA downstream 75469 19701080 ~ 19710338 (+) False colq
XM_039806495.1 mRNA downstream 75469 19701080 ~ 19710338 (+) False colq
TU98340 other upstream 455508 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 455508 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 867828 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 960866 18652411 ~ 18653637 (+) False LOC120562819
TU98016 other upstream 977196 18635436 ~ 18637307 (+) False LOC120562796
TU98645 other downstream 21364 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 1382422 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 1777516 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 1973444 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 2143937 21769548 ~ 21770286 (+) True G74633

Expression Profile